A list of bioinformatic tools for working with Ribo-Seq data
☆26Apr 11, 2024Updated 2 years ago
Alternatives and similar repositories for awesome-riboseq
Users that are interested in awesome-riboseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for Ribosome footprinting data☆26Jan 29, 2026Updated 7 months ago
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆21May 25, 2026Updated 3 months ago
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆35Updated this week
- An R package for Splice-aware quantification of translation using Ribo-seq data☆21Dec 20, 2023Updated 2 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- ☆21Apr 20, 2026Updated 4 months ago
- Scripts and instructions to apply RiboTIE on Ribo-seq data☆20Jul 22, 2025Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆64Feb 24, 2025Updated last year
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆16Aug 5, 2026Updated 3 weeks ago
- ☆17Feb 3, 2020Updated 6 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- ☆10Jan 15, 2020Updated 6 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆20Aug 9, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- Pipeline for Ribosome Profiling Data☆19Updated this week
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 3 years ago
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated last year
- direct RNA nanopore sequencing barcode design and demultiplexing☆21Aug 3, 2026Updated 3 weeks ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jul 9, 2026Updated last month
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 6 years ago
- A package to run real time analysis of nanopore methylation data.☆26Aug 22, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jan 28, 2019Updated 7 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆56Updated this week
- co-expressed gene-set enrichment analysis☆13Nov 20, 2023Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- Assessing the quality of genomes using busco☆16Mar 23, 2023Updated 3 years ago
- The tRNA adaptation index☆22Apr 25, 2025Updated last year
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 9 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- ☆17May 27, 2026Updated 3 months ago
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago
- Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing☆43Jun 8, 2026Updated 2 months ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 3 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆54Oct 21, 2025Updated 10 months ago