A list of bioinformatic tools for working with Ribo-Seq data
☆20Apr 11, 2024Updated last year
Alternatives and similar repositories for awesome-riboseq
Users that are interested in awesome-riboseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for Ribosome footprinting data☆25Jan 29, 2026Updated 2 months ago
- A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control.☆19Dec 12, 2025Updated 3 months ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated 10 months ago
- ☆11Jan 15, 2020Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆59Feb 24, 2025Updated last year
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆25Mar 6, 2026Updated 3 weeks ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Jul 19, 2025Updated 8 months ago
- RiboPlotR package for Ribo-plot☆16Jun 12, 2025Updated 9 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Assessing the quality of genomes using busco☆14Mar 23, 2023Updated 3 years ago
- ☆13Jan 28, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The tRNA adaptation index☆20Apr 25, 2025Updated 11 months ago
- SkewC a novel quality-assessment method to identify poor quality single-cells in scRNA-seq experiments. The method relies on the measure …☆10Aug 2, 2023Updated 2 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆50Oct 21, 2025Updated 5 months ago
- ☆12Apr 29, 2024Updated last year
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 8 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆14Dec 22, 2025Updated 3 months ago
- bioinformatics R test code☆14Feb 1, 2026Updated last month
- ☆11Dec 15, 2025Updated 3 months ago
- GLASS consortium☆14May 31, 2022Updated 3 years ago
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆29Jan 16, 2024Updated 2 years ago
- ☆26Oct 1, 2023Updated 2 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- Reusable tools for working with next-generation sequencing (NGS) data☆12Oct 7, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 9 months ago
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆53Jul 13, 2023Updated 2 years ago
- 在R语言中使用ChatGPT(中国大陆版)☆12Mar 17, 2023Updated 3 years ago
- MaxQuant and Perseus Bug Reporting☆10Mar 19, 2025Updated last year
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Jun 29, 2017Updated 8 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 3 months ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago