cougarlj / COMPSRA
COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis
☆16Updated 4 years ago
Alternatives and similar repositories for COMPSRA:
Users that are interested in COMPSRA are comparing it to the libraries listed below
- Merge fastq files split over lanes☆20Updated 7 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- R package wrapping bedtools☆39Updated last month
- interactive plots for differential expression analysis☆32Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆27Updated last year
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- DriverPower☆26Updated 3 months ago
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆28Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆23Updated 4 months ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated 6 months ago
- ☆16Updated 2 weeks ago
- Tool for RNA-Seq analysis.☆38Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 4 months ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data☆16Updated 7 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- 📊 An R package of RNA-seq workflow☆16Updated 2 years ago
- documentation for trackViewer☆29Updated 5 years ago
- ☆9Updated 5 years ago