Alternatives and similar repositories for COMPSRA

Users that are interested in COMPSRA are comparing it to the libraries listed below

• gersteinlab / exceRpt
  Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
  ☆23Updated 2 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 6 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 2 months ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• sonali-bioc / UncertaintyRNA
  This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…
  ☆28Updated last year
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 2 months ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 7 months ago
• UMMS-Biocore / debrowser
  Differential Count Data Analysis Toolbox
  ☆61Updated last year
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• williamritchie / IRFinder
  Detecting intron retention from RNA-Seq experiments
  ☆55Updated last year
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 7 months ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆42Updated 5 months ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆25Updated 2 months ago
• kendomaniac / docker4seq
  Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.
  ☆25Updated 4 months ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆33Updated last month
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆21Updated last month
• TheJacksonLaboratory / JAXBD2K-ShortCourse
  This repository contains course materials from JAX-BD2K workshop.
  ☆32Updated 6 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 6 years ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• BIMSBbioinfo / genomation
  R package for genomic feature analysis and visualization
  ☆79Updated 4 months ago
• 123xiaochen / VCFshiny
  ☆29Updated 10 months ago
• jokergoo / KeywordsEnrichment
  ☆32Updated last year
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆39Updated 3 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 2 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago