Alternatives and similar repositories for COMPSRA:

Users that are interested in COMPSRA are comparing it to the libraries listed below

• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• yuewangpanda / BioMethyl
  An R package to interpret biological trends from DNA methylation data
  ☆16Updated 2 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated last month
• gersteinlab / exceRpt
  Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
  ☆22Updated last year
• mbourgey / EBI_cancer_workshop_CNV
  hands-on for NGS/SNParray CNV call trainning
  ☆17Updated 2 years ago
• shbrief / CNVWorkflow_Code
  CNV analysis workflow code for the manuscript
  ☆13Updated 4 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆31Updated this week
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆32Updated 2 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated 2 months ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated last year
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆26Updated 2 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆28Updated 2 months ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆22Updated 3 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 2 years ago
• ben-laufer / CpG_Me
  A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …
  ☆23Updated 2 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 5 months ago
• bioinformatics-core-shared-training / cruk-summer-school-2018
  Summer school course materials collection
  ☆25Updated 6 years ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆19Updated last year
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆24Updated 5 years ago
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆16Updated 3 years ago
• btmonier / vidger
  Make rapid visualizations of RNA-seq data in R
  ☆19Updated 5 years ago
• griffithlab / genviz.org
  Genomic data interpretation and visualization Workshop
  ☆19Updated last year
• nasqar / ClusterProfShinyGSEA
  A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
  ☆18Updated 5 years ago
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆31Updated 7 months ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• rcavalcante / annotatr
  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…
  ☆26Updated 6 months ago
• Core-Bioinformatics / bulkAnalyseR
  ☆27Updated last year