☆12Jun 12, 2023Updated 2 years ago
Alternatives and similar repositories for Structural-Annotation
Users that are interested in Structural-Annotation are comparing it to the libraries listed below
Sorting:
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆29Jan 17, 2024Updated 2 years ago
- I often use some of the self-written programs.☆16Nov 13, 2025Updated 4 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Apr 10, 2024Updated last year
- ☆20Oct 10, 2020Updated 5 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- ☆11Updated this week
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- ☆11Sep 28, 2021Updated 4 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆23Updated this week
- ☆18Dec 15, 2021Updated 4 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆12May 24, 2022Updated 3 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Jun 14, 2024Updated last year
- A tool to visualize the haplotype pattern and various information in excel.☆24Mar 5, 2025Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- Repository☆10Oct 23, 2024Updated last year
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- ☆29Apr 16, 2023Updated 2 years ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- ☆24Jul 29, 2025Updated 7 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Oct 21, 2025Updated 4 months ago
- Notes on SNP-related tools and genome variation analysis☆28Aug 30, 2025Updated 6 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 weeks ago
- This repository contains a Python script, heic_to_jpeg.py, designed to convert HEIC files to JPEG format. The script utilizes the Pillow …☆14Dec 22, 2025Updated 2 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 7 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- Awk, bash, python scripts for processing NGS data☆14Nov 6, 2015Updated 10 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago