small rna-seq analysis package
☆30Nov 7, 2022Updated 3 years ago
Alternatives and similar repositories for smallrnaseq
Users that are interested in smallrnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Reproducible Programming in R course, developed by the School of Biodiversity, One Health and Veterinary Medicine at the University o…☆12Dec 20, 2022Updated 3 years ago
- Bio-dockers: dockerized bioinformatic tools☆32Aug 6, 2025Updated 7 months ago
- ☆15Nov 11, 2019Updated 6 years ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 4 years ago
- Golang for Bioinformatics☆32Aug 16, 2016Updated 9 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 weeks ago
- A small-RNA sequencing analysis pipeline☆98Jan 7, 2026Updated 2 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Comprehensive analysis of small RNA sequencing data☆36May 14, 2025Updated 10 months ago
- ☆21Sep 12, 2019Updated 6 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- ☆14Mar 13, 2018Updated 8 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 7 years ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 3 years ago
- Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.☆29May 24, 2023Updated 2 years ago
- KOBAS: a command line tool for identifying significant pathways from genomic data☆32Mar 7, 2010Updated 16 years ago
- ☆13Sep 5, 2017Updated 8 years ago
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- A toolkit for NGS analysis with Python☆14Jan 18, 2023Updated 3 years ago
- RNAcentral website source code☆33Updated this week
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Demographic analysis of Brassica oleracea☆10Jan 30, 2026Updated last month
- Processing and plotting tools for genomics data☆22Jan 31, 2026Updated last month
- ☆12Nov 26, 2025Updated 3 months ago
- ☆17Nov 19, 2025Updated 4 months ago
- ☆14Mar 25, 2016Updated 9 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Oct 22, 2022Updated 3 years ago
- An R package for automatically aggregating and summarizing lncRNA analysis results.☆16Mar 5, 2019Updated 7 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…☆13Apr 13, 2021Updated 4 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 10 months ago
- Pipelines for NGS data preprocessing by the Bock lab and friends☆22Aug 29, 2022Updated 3 years ago
- ☆20Sep 8, 2023Updated 2 years ago
- ☆14Aug 30, 2025Updated 6 months ago
- Coding-Non-Coding Index (CNCI)☆42Mar 6, 2018Updated 8 years ago