dmnfarrell / smallrnaseqLinks
small rna-seq analysis package
☆30Updated 2 years ago
Alternatives and similar repositories for smallrnaseq
Users that are interested in smallrnaseq are comparing it to the libraries listed below
Sorting:
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆82Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- Analysis pipeline for the GUIDE-seq assay.☆78Updated 2 years ago
- ☆58Updated 3 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated last month
- Tools for making plots of genomic datasets in a genome-browser-like format☆32Updated 6 months ago
- Unsorted scripts for bioinformatics☆61Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆26Updated last month
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆76Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆71Updated last year
- Galaxy RNA workbench☆40Updated 4 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- New version of JACUSA -> 2.0☆27Updated last month
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Python package to annotate and visualize gene fusions.☆63Updated 8 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆63Updated 11 months ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆69Updated 6 months ago
- HiC uniform processing pipeline☆60Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Scripts for next generation sequencing☆48Updated 5 years ago
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago