dmnfarrell / smallrnaseqLinks
small rna-seq analysis package
☆30Updated 3 years ago
Alternatives and similar repositories for smallrnaseq
Users that are interested in smallrnaseq are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Updated 8 years ago
- HiC uniform processing pipeline☆62Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- Extract data quickly from Juicebox via straw☆69Updated 8 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 2 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆92Updated 5 months ago
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆77Updated 5 years ago
- ☆60Updated 5 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 3 weeks ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- circular RNA analysis toolset☆86Updated last year
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- microRNA profiling pipeline☆79Updated 3 years ago
- ☆91Updated 5 months ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 10 months ago
- Quantification of transposable element expression using RNA-seq☆78Updated last year
- A small-RNA sequencing analysis pipeline☆98Updated last week
- FlashFry: The rapid CRISPR target site characterization tool☆77Updated last year
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆92Updated 3 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 3 years ago
- Scripts for next generation sequencing☆49Updated 6 years ago