dmnfarrell / smallrnaseq
small rna-seq analysis package
☆29Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for smallrnaseq
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆74Updated last week
- A list of alternative splicing analysis resources☆37Updated last week
- FEELnc : FlExible Extraction of LncRNA☆82Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 9 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆45Updated 10 months ago
- New version of JACUSA -> 2.0☆23Updated this week
- Tip and tricks for BAM files☆84Updated 6 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Scripts for next generation sequencing☆47Updated 5 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆39Updated last year
- PHAST☆68Updated this week
- Publication quality NGS track plotting☆108Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆47Updated 4 years ago
- ☆53Updated 3 years ago
- Quantification of transposable element expression using RNA-seq☆64Updated 9 months ago
- Analysis pipeline for the GUIDE-seq assay.☆23Updated 3 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 4 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Tools for making plots of genomic datasets in a genome-browser-like format☆30Updated last month
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- ☆22Updated 6 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆76Updated 3 months ago
- HiC uniform processing pipeline☆57Updated last year
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆63Updated 3 weeks ago
- ☆88Updated 4 years ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Allele-specific alignment sorting☆53Updated last year