open2c / distiller-nfLinks
A modular Hi-C mapping pipeline
☆94Updated 5 months ago
Alternatives and similar repositories for distiller-nf
Users that are interested in distiller-nf are comparing it to the libraries listed below
Sorting:
- Extract 3D contacts (.pairs) from sequencing alignments☆112Updated 4 months ago
- Lightweight converter between hic and cool contact matrices.☆73Updated 10 months ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆86Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆114Updated last year
- The tools for your .cool's☆151Updated 7 months ago
- HiC uniform processing pipeline☆59Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆67Updated 6 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆99Updated last month
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 7 months ago
- ☆116Updated last year
- ☆91Updated 2 weeks ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 4 years ago
- Genome-wide contact analysis using sklearn☆65Updated last year
- Publication quality NGS track plotting☆113Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆91Updated 2 weeks ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆170Updated 11 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆249Updated 6 months ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 7 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆119Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆65Updated last year
- Fast alignment and preprocessing of chromatin profiles☆200Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 6 months ago