open2c / distiller-nfLinks
A modular Hi-C mapping pipeline
☆98Updated 8 months ago
Alternatives and similar repositories for distiller-nf
Users that are interested in distiller-nf are comparing it to the libraries listed below
Sorting:
- Extract 3D contacts (.pairs) from sequencing alignments☆115Updated this week
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆89Updated 2 years ago
- The tools for your .cool's☆153Updated last month
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 9 months ago
- FAN-C: Framework for the ANalysis of C-like data☆117Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- Fast alignment and preprocessing of chromatin profiles☆203Updated 3 weeks ago
- HiC uniform processing pipeline☆60Updated last year
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆74Updated last month
- Genome-wide contact analysis using sklearn☆68Updated last year
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆69Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- Quantification of transposable element expression using RNA-seq☆74Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 2 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 9 months ago
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆70Updated 9 months ago
- An easy-to-use Hi-C data processing software supporting distributed computation.☆61Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆105Updated 2 months ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆50Updated 8 years ago
- Software for Quantifying Interspersed Repeat Expression☆61Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆144Updated 2 years ago
- ☆95Updated last week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆166Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago