Tutorial Website
☆65Feb 1, 2021Updated 5 years ago
Alternatives and similar repositories for CUTTag_tutorial
Users that are interested in CUTTag_tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- Pipeline for Cut&Tag analysis☆25Apr 15, 2025Updated last year
- Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit☆14Mar 12, 2026Updated 2 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆120Jan 15, 2023Updated 3 years ago
- ☆18May 12, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analysis pipeline for ATAC-seq Data☆63Sep 2, 2021Updated 4 years ago
- chromatin Variability Across Regions (of the genome!)☆190May 1, 2026Updated 2 weeks ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 3 years ago
- ☆11Jul 4, 2022Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆48Mar 26, 2025Updated last year
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 8 years ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆42Jan 31, 2024Updated 2 years ago
- Analyzing chromatin accessibility data in R☆19Jun 23, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Extract 3D contacts (.pairs) from sequencing alignments☆132Feb 3, 2026Updated 3 months ago
- Peak caller for CUT&TAG data☆31Aug 18, 2022Updated 3 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Nov 12, 2024Updated last year
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- AQUAS TF and histone ChIP-seq pipeline☆112Jun 21, 2022Updated 3 years ago
- ☆18Feb 18, 2021Updated 5 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆75Jan 8, 2025Updated last year
- Example scripts for analyzing CUT&RUN datasets☆13Oct 3, 2018Updated 7 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆42Feb 22, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆53Jan 15, 2026Updated 4 months ago
- CUT&RUN and CUT&Tag data processing and analysis☆114Mar 4, 2025Updated last year
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- ENCODE ATAC-seq pipeline☆449Jul 18, 2024Updated last year
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆110May 14, 2026Updated last week
- Genome-wide contact analysis using sklearn☆74Mar 23, 2024Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆82Jan 24, 2025Updated last year
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 9 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 11 months ago
- IDR☆176Sep 18, 2018Updated 7 years ago
- Links to ATAC-seq analysis tools☆78Aug 24, 2021Updated 4 years ago
- ☆33Jul 20, 2018Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year