ParkerLab / bioinf525
ATAC-seq lab for BIOINF525
☆10Updated 8 years ago
Related projects ⓘ
Alternatives and complementary repositories for bioinf525
- A toolkit for working with ATAC-seq data.☆24Updated 4 months ago
- ☆17Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated last year
- ☆23Updated 3 years ago
- GTEx analysis scripts☆20Updated 7 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- Main repository for Drews et al. (Nature, 2022)☆37Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- ATAC-seq processing pipeline☆31Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 2 months ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 5 months ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆30Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- ☆15Updated 3 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- <<------ Use SnapATAC!!☆25Updated 5 years ago
- ☆27Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- chia pet analysis software☆25Updated 5 years ago