ParkerLab / bioinf525Links
ATAC-seq lab for BIOINF525
☆10Updated 9 years ago
Alternatives and similar repositories for bioinf525
Users that are interested in bioinf525 are comparing it to the libraries listed below
Sorting:
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- hands-on for NGS/SNParray CNV call trainning☆17Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆17Updated 6 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 weeks ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- ☆13Updated 7 years ago
- ☆44Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 5 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- ATAC-seq lab for BIOINF545☆24Updated 5 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago