nextstrain / ncov-clades-schemaLinks
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
☆16Updated 3 weeks ago
Alternatives and similar repositories for ncov-clades-schema
Users that are interested in ncov-clades-schema are comparing it to the libraries listed below
Sorting:
- Consensus sequences for each Pango lineage☆22Updated 2 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated last month
- Reference-based consensus creation☆56Updated this week
- Datasets for https://github.com/nextstrain/nextclade☆38Updated this week
- ☆31Updated last week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆118Updated 2 weeks ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 3 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 4 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 4 months ago
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- ☆49Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 7 months ago
- Standard database for the TBProfiler tool☆31Updated 2 weeks ago
- Bioinformatics Pipeline and Visualization resources☆57Updated last year
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆42Updated last year
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆35Updated last week
- Precise host read removal☆102Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- Primer schemes for real-time genome epidemiology☆29Updated 2 years ago
- ☆39Updated 2 months ago
- ☆75Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 6 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- ☆23Updated last year