Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
☆18Nov 24, 2025Updated 7 months ago
Alternatives and similar repositories for ncov-clades-schema
Users that are interested in ncov-clades-schema are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- SARS-CoV-2 genome data analysis☆10Dec 6, 2025Updated 7 months ago
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- Datasets for https://github.com/nextstrain/nextclade☆46Updated this week
- ☆10Apr 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated last year
- ☆20Apr 25, 2023Updated 3 years ago
- Depth-weighted De-Mixing☆135Updated this week
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 4 months ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Jul 9, 2026Updated last week
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 3 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Jul 14, 2026Updated last week
- ☆11Aug 18, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16May 12, 2023Updated 3 years ago
- ☆51Mar 11, 2022Updated 4 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- Informal summaries of notable SARS-CoV-2 lineages☆111Jun 1, 2026Updated last month
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- Repository to propose and discuss lineages☆54Jul 12, 2026Updated last week
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 7 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- ☆21Apr 2, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Miscellaneous helper tools for epidemiologists☆10Nov 9, 2025Updated 8 months ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated 11 months ago
- Nextstrain build for dengue virus☆15Jul 7, 2026Updated 2 weeks ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆260Jul 10, 2026Updated last week
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated last week
- UPHL's Reference Free Pipeline☆29Updated this week
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆58Updated this week
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆22Nov 8, 2024Updated last year
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆13Jan 23, 2026Updated 5 months ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated last year
- ☆25Jun 25, 2024Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated 3 months ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 2 weeks ago