Alternatives and similar repositories for SARS-CoV-2-RBD_DMS_variants

Users that are interested in SARS-CoV-2-RBD_DMS_variants are comparing it to the libraries listed below

• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆30Updated 11 months ago
• GradinaruLab / APPRAISE
  Rank binders by structure modeling
  ☆16Updated 5 months ago
• Fleishman-Lab / CUMAb
  ☆19Updated 4 months ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆29Updated 3 months ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆73Updated 2 months ago
• Kuhlman-Lab / evopro
  ☆86Updated 2 weeks ago
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated 2 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated last month
• seanrjohnson / protein_gibbs_sampler
  Gibbs sampling for generating protein sequences
  ☆56Updated 6 months ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 4 years ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆20Updated last year
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆35Updated 2 weeks ago
• dina-lab3D / CombFold
  ☆85Updated 10 months ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆51Updated 4 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆43Updated 6 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated last month
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated 2 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆44Updated last month
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated 11 months ago
• AbSciBio / igdesign
  ☆43Updated 7 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆39Updated 4 months ago
• rigdenlab / ABCFold
  Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.
  ☆85Updated 2 weeks ago
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆96Updated last year
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆63Updated 8 months ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆91Updated 2 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆84Updated 2 months ago