CDCgov / tostadasLinks
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
☆27Updated this week
Alternatives and similar repositories for tostadas
Users that are interested in tostadas are comparing it to the libraries listed below
Sorting:
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last month
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- ☆18Updated last week
- Plasmid and antimicrobial resistance pipeline☆16Updated 5 months ago
- Read contamination removal☆25Updated last year
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Static website for the PH4AGE alliance☆12Updated last year
- Influenza data pipeline to automate genotyping assignment☆33Updated this week
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- SARs-CoV-2 Primer schemes☆16Updated 3 weeks ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆36Updated 2 weeks ago
- Main development repository for SpreadGL☆18Updated 8 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 11 months ago
- Interpretative standards for AMR genotypes☆21Updated this week
- REcombination BARcode detector.☆13Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- ☆26Updated last year
- CFSAN Shigella Typing Pipeline☆14Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Harmonization of AMR predictor tool outputs☆25Updated 4 months ago
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- Systematic ProtEin AnnotatoR☆19Updated 7 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated 6 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- SC2 variant detection and composition pipeline☆17Updated last year