CDCgov / tostadasLinks
𧬠π» TOSTADAS β Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
β27Updated last week
Alternatives and similar repositories for tostadas
Users that are interested in tostadas are comparing it to the libraries listed below
Sorting:
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositoriesβ38Updated 2 months ago
- UPHL's Reference Free Pipelineβ26Updated last month
- β18Updated last week
- Read contamination removalβ25Updated last year
- Static website for the PH4AGE allianceβ12Updated last year
- Plasmid and antimicrobial resistance pipelineβ16Updated 5 months ago
- π»βπ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tablesβ27Updated last year
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ38Updated 2 months ago
- REcombination BARcode detector.β15Updated last year
- A pipeline for bioinformatics analysis of bacterial genomesβ30Updated this week
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- β26Updated last year
- π π« Trim, circularise and orient long read bacterial genome assembliesβ26Updated 5 years ago
- Organism-specific interpretation of AMR genotypesβ13Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenomeβ49Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasetsβ29Updated 11 months ago
- Interpretative standards for AMR genotypesβ21Updated 2 weeks ago
- Predict plasmids from uncorrected long read dataβ40Updated 5 years ago
- Utility to alias and dealias pango lineagesβ22Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulationsβ12Updated 7 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomiβ¦β37Updated last week
- SC2 variant detection and composition pipelineβ17Updated last year
- TAXnomic Profile Aggregation and STAndardisationβ41Updated 7 months ago
- SARs-CoV-2 Primer schemesβ16Updated last month
- Working with the outputs of sourmash in Rβ27Updated last year
- Systematic ProtEin AnnotatoRβ19Updated 8 months ago
- Harmonization of AMR predictor tool outputsβ25Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ45Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBIβ29Updated 6 years ago
- CFSAN Shigella Typing Pipelineβ14Updated last year