🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
☆29Mar 10, 2026Updated 5 months ago
Alternatives and similar repositories for tostadas
Users that are interested in tostadas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- UPHL's Reference Free Pipeline☆29Updated this week
- Bacterial surveillance pipeline.☆28Updated this week
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆10Apr 16, 2025Updated last year
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆14May 23, 2023Updated 3 years ago
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆65Updated this week
- Scripts and reference files to type Group A Streptococcus☆11Apr 1, 2026Updated 4 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆80Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆94Jul 23, 2026Updated 2 weeks ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆62Mar 23, 2023Updated 3 years ago
- ☆29May 19, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated last year
- 🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens☆110Updated this week
- ☆23Jul 22, 2026Updated 3 weeks ago
- ☆24Feb 2, 2026Updated 6 months ago
- NCBI Pathogen Detection Portal toolkit☆11Sep 6, 2023Updated 2 years ago
- Reference-based consensus creation☆61Updated this week
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Jun 12, 2026Updated 2 months ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆38Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 weeks ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Dockerfiles and documentation on tools for public health bioinformatics☆225Updated this week
- An open-source software package to power microbial genomic databases☆73Updated this week
- Bioinformatics Pipeline and Visualization resources☆65Aug 30, 2024Updated last year
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆58Updated this week
- A tool for exploring large trees in the browser☆133Jul 27, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Updated this week
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Aug 5, 2026Updated last week
- Assembly of Nanopore Sequencing☆17May 21, 2026Updated 2 months ago
- Software for the Tree-Based Scan Statistic☆17Aug 4, 2026Updated last week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 9 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago