CDCgov / tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
☆27Updated this week
Alternatives and similar repositories for tostadas:
Users that are interested in tostadas are comparing it to the libraries listed below
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆35Updated 3 weeks ago
- UPHL's Reference Free Pipeline☆26Updated 3 weeks ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Static website for the PH4AGE alliance☆12Updated last year
- ☆18Updated this week
- Systematic ProtEin AnnotatoR☆19Updated 5 months ago
- Plasmid and antimicrobial resistance pipeline☆16Updated 2 months ago
- Bacterial surveillance pipeline.☆24Updated last month
- Read contamination removal☆25Updated last year
- Influenza data pipeline to automate genotyping assignment☆29Updated last month
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆34Updated this week
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆37Updated 3 months ago
- SARs-CoV-2 Primer schemes☆15Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 8 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆33Updated last week
- Influenza genome analysis Nextflow workflow☆21Updated 2 months ago
- Utility to alias and dealias pango lineages☆22Updated last year
- SC2 variant detection and composition pipeline☆17Updated last year
- ☆26Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆20Updated this week
- Remove host contaminants from sequencing files☆9Updated 4 years ago
- Interpretative standards for AMR genotypes☆18Updated 8 months ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- REcombination BARcode detector.☆13Updated 11 months ago