vector-engineering / covidcgLinks
A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
☆26Updated 2 weeks ago
Alternatives and similar repositories for covidcg
Users that are interested in covidcg are comparing it to the libraries listed below
Sorting:
- Main development repository for SpreadGL☆20Updated last year
- viral-ngs: complete pipelines☆71Updated last week
- ☆31Updated 4 years ago
- ☆13Updated 8 years ago
- Visualization of the pan-genome output by panX☆66Updated 7 months ago
- ☆10Updated 2 months ago
- ☆26Updated 3 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- a minimal, scriptable genome browser for python☆53Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last week
- Portable WDL workflows for IDseq production pipelines☆32Updated 4 years ago
- SARs-CoV-2 Primer schemes☆16Updated 8 months ago
- Inference of putative transmission phylogenetic clusters☆12Updated 5 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 4 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- mtDNA Variant Caller☆35Updated last year
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 2 months ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Updated 2 years ago
- Public Health England SNP calling pipeline.☆37Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 6 months ago
- A collection of documented examples using TreeTime☆22Updated 6 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Fast sequencing data quality metrics☆31Updated 4 months ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- A python package for showing JBrowse views☆26Updated 2 years ago
- Run shell commands in a scientifically reproducible and robust way☆23Updated this week