vector-engineering / covidcgLinks
A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
☆26Updated 2 months ago
Alternatives and similar repositories for covidcg
Users that are interested in covidcg are comparing it to the libraries listed below
Sorting:
- viral-ngs: complete pipelines☆63Updated 2 weeks ago
- ☆10Updated 2 months ago
- Main development repository for SpreadGL☆18Updated 8 months ago
- Nextflow workflow template repository☆18Updated 3 weeks ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- ☆13Updated 7 years ago
- SARs-CoV-2 Primer schemes☆16Updated 3 weeks ago
- ☆24Updated 3 months ago
- Webin command line submission program.☆33Updated 2 months ago
- Systematic ProtEin AnnotatoR☆19Updated 7 months ago
- deduplicate FASTA and FASTQ files☆21Updated 3 years ago
- A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, Lo…☆19Updated 10 months ago
- Fast sequencing data quality metrics☆26Updated last week
- Tools for working with Variant Call Format files.☆12Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆54Updated 2 years ago
- ☆31Updated 4 years ago
- Fully automated generation of UCSC assembly hubs☆34Updated 8 months ago
- Visualization of the pan-genome output by panX☆63Updated 2 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆52Updated this week
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Interactive phylogenetic tree viewer/editor☆47Updated last year
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A dotplot generator for large chromosomes☆42Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago