Alternatives and similar repositories for covidcg

Users that are interested in covidcg are comparing it to the libraries listed below

• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 9 months ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆66Updated 3 weeks ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆19Updated 11 months ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• snakemake / snakedeploy
  deploy a snakemake pipeline directly from version control (under development)
  ☆25Updated last week
• mskilab-org / gGnome.js
  ☆26Updated 2 years ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆34Updated 11 months ago
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• higlass / higlass-pileup
  ☆10Updated 5 months ago
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆34Updated 3 years ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• lh3 / jstreeview
  Interactive phylogenetic tree viewer/editor
  ☆48Updated 2 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆64Updated 3 months ago
• MHH-RCUG / Wochenende
  Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
  ☆37Updated 3 years ago
• PacificBiosciences / pbAA
  ☆26Updated 6 months ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆63Updated 3 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• brentp / rare-disease-wf
  (WIP) best-practices workflow for rare disease
  ☆62Updated last year
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆28Updated last week
• atifrahman / HAWK
  Hitting associations with k-mers
  ☆44Updated 3 years ago
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆44Updated 3 years ago
• samuell / scicommander
  Run shell commands in a scientifically reproducible and robust way
  ☆17Updated 6 months ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆34Updated 8 months ago
• YaCui / NG-Circos
  ☆32Updated 4 years ago
• pepkit / looper
  A job submitter for Portable Encapsulated Projects
  ☆22Updated 6 months ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆54Updated last year