Alternatives and similar repositories for covidcg

Users that are interested in covidcg are comparing it to the libraries listed below

• mskilab-org / gGnome.js
  ☆26Updated 2 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• higlass / higlass-pileup
  ☆10Updated 2 weeks ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆52Updated 11 months ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆19Updated last year
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆68Updated last week
• YaCui / NG-Circos
  ☆32Updated 4 years ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆35Updated 10 months ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆35Updated last year
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 8 years ago
• chanzuckerberg / czid-dag
  Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
  ☆27Updated 3 years ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆23Updated 5 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆27Updated 2 years ago
• SexChrLab / XYalign
  ☆29Updated 6 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆16Updated 3 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆32Updated 3 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆21Updated last week