vector-engineering / covidcg

Related projects: ⓘ

• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated 8 months ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆51Updated 2 weeks ago
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆30Updated 2 months ago
• mskilab-org / gGnome.js
  ☆26Updated last year
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆25Updated this week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆47Updated 4 months ago
• neherlab / pan-genome-visualization
  Visualization of the pan-genome output by panX
  ☆61Updated last year
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• Gaius-Augustus / MakeHub
  Fully automated generation of UCSC assembly hubs
  ☆33Updated 7 months ago
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆31Updated 2 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆36Updated last year
• YaCui / NG-Circos
  ☆29Updated 3 years ago
• onecodex / sars-cov-2
  SARS-CoV-2 variant calling and consensus assembly pipeline
  ☆23Updated last year
• seppinho / mutserve
  mtDNA Variant Caller
  ☆31Updated 3 months ago
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆38Updated 3 weeks ago
• lh3 / jstreeview
  Interactive phylogenetic tree viewer/editor
  ☆46Updated last year
• linsalrob / SRA_Metadata
  Get, parse, and extract information from the SRA metadata files
  ☆36Updated 2 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆44Updated this week
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆19Updated 2 years ago
• nanoporetech / pipeline-nanopore-denovo-isoforms
  Pipeline for de novo clustering of long transcriptomic reads
  ☆26Updated 2 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆20Updated 4 months ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated last year
• kamimrcht / REINDEER
  REINDEER REad Index for abuNDancE quERy
  ☆56Updated last month
• jordanlab / tagore
  The script presents a simple way to visualize features on human chromosome ideograms
  ☆38Updated last year
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆40Updated 3 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated 10 months ago
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆26Updated 5 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆28Updated 2 months ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 2 years ago