SARS-CoV-2 genome data analysis
☆10Dec 6, 2025Updated 7 months ago
Alternatives and similar repositories for sars-cov-2-genomes
Users that are interested in sars-cov-2-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive infographic of Global COVID-19 Vaccinations☆13May 6, 2026Updated 2 months ago
- Projects on COVID-19 topic of genomic sequencing - mostly DataViz☆58Updated this week
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 7 months ago
- ☆10May 28, 2023Updated 3 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Informal summaries of notable SARS-CoV-2 lineages☆111Jun 1, 2026Updated last month
- Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater☆22Jul 2, 2026Updated last week
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆31Jul 2, 2026Updated last week
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Feb 2, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python toolkit and package for analyzing enzyme activity data☆12Jun 17, 2022Updated 4 years ago
- ☆16Oct 29, 2025Updated 8 months ago
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated 11 months ago
- During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific r…☆35Jun 30, 2026Updated last week
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- Ultrafast Sample Placement on Existing Trees☆140Jun 1, 2026Updated last month
- Datasets for https://github.com/nextstrain/nextclade☆46Updated this week
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Find and Download WorldPop rasters through QGIS☆12Sep 5, 2025Updated 10 months ago
- Stata module to access World Bank’s Global Poverty and Inequality data☆13Mar 31, 2026Updated 3 months ago
- Pyro models of SARS-CoV-2 variants☆79Jul 26, 2024Updated last year
- This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course☆11Jul 5, 2024Updated 2 years ago
- ☆45Feb 13, 2026Updated 4 months ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆259May 26, 2026Updated last month
- ☆11Aug 18, 2024Updated last year
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated 2 years ago
- Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data☆20May 5, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- [Experimental] A coding agent for RStudio☆47Jul 2, 2026Updated last week
- Compartmental Epidemic Models in Python☆15Mar 30, 2025Updated last year
- Projects to explore detailed outbreak paths. Mostly dataviz using Power BI☆14Oct 19, 2024Updated last year
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Apr 2, 2026Updated 3 months ago
- OpenBabel wrapper package for R☆10Mar 12, 2026Updated 3 months ago
- Data and images for the NFL's Big Data Bowl 2022 Student Competition☆13Sep 7, 2022Updated 3 years ago