Mike-Honey / sars-cov-2-genomesLinks
SARS-CoV-2 genome data analysis
☆10Updated 2 weeks ago
Alternatives and similar repositories for sars-cov-2-genomes
Users that are interested in sars-cov-2-genomes are comparing it to the libraries listed below
Sorting:
- Software for the Tree-Based Scan Statistic☆12Updated this week
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated last week
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Updated 3 years ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated 3 weeks ago
- Global phylogenies of SARS-CoV-2 sequences☆85Updated 2 years ago
- A tool for exploring large trees in the browser☆119Updated last week
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆28Updated this week
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated last year
- Scalable relaxed clock phylogenetic dating☆27Updated 3 months ago
- Estimating time trees from very large phylogenies☆28Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Updated 3 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated this week
- Reconstruction of transmission trees using genomic data☆69Updated 2 years ago
- ☆74Updated last year
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆12Updated 4 years ago
- Rapid analysis and visualization of coronavirus genome variation☆48Updated last week
- A DRAFT, early stage book on snakemake.☆22Updated 2 years ago
- SARS-CoV-2 genomics☆16Updated 6 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated this week
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 6 months ago
- A collection of documented examples using TreeTime☆22Updated 6 years ago
- Main development repository for SpreadGL☆20Updated last year
- Utility to alias and dealias pango lineages☆23Updated 2 years ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆12Updated 8 years ago
- ☆11Updated 10 months ago
- SARs-CoV-2 Primer schemes☆16Updated 7 months ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated 2 weeks ago
- Lightweight header-only C++ library for loading and traversing trees☆20Updated 9 months ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆37Updated 4 months ago
- Programmatically interact with the GISAID database.☆79Updated 4 months ago