Alternatives and similar repositories for ncov-recombinant

Users that are interested in ncov-recombinant are comparing it to the libraries listed below

• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆22Updated last year
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆18Updated 8 months ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆16Updated last month
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆29Updated 11 months ago
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 8 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆38Updated 2 months ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated 2 months ago
• CFIA-NCFAD / wgscovplot
  The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…
  ☆19Updated last year
• MDU-PHL / pango-collapse
  app to collapse Pango lineages for reporting
  ☆12Updated last year
• cambiotraining / sars-cov-2-genomics
  Course materials for an introduction to SARS-CoV-2 sequencing data analysis
  ☆14Updated 10 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆57Updated 2 months ago
• pierrepeterlongo / back_to_sequences
  ☆42Updated this week
• MDU-PHL / bohra
  A pipeline for bioinformatics analysis of bacterial genomes
  ☆30Updated this week
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆24Updated last year
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• theiagen / public_health_bacterial_genomics
  ☆26Updated last year
• phac-nml / rebar
  REcombination BARcode detector.
  ☆15Updated last year
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆28Updated 4 months ago
• dhelekal / CaveDive
  ☆17Updated last year
• andersgs / harrietr
  An `R` package for various phylogenetic and evolutionary biology data manipulations
  ☆12Updated 7 years ago
• kullrich / snpless-nf
  snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.
  ☆14Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated last month
• tseemann / berokka
  🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
  ☆26Updated 5 years ago
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆20Updated 2 months ago
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆30Updated last month
• iqbal-lab-org / viridian
  ☆21Updated 3 months ago
• tseemann / scripts
  Miscellaneous Perl scripts from 20 years in microbial bioinformatics
  ☆17Updated 11 months ago
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• maxgmarin / panqc
  A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses
  ☆19Updated last year
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆26Updated 2 months ago