ktmeaton / ncov-recombinantLinks
Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
☆18Updated 2 years ago
Alternatives and similar repositories for ncov-recombinant
Users that are interested in ncov-recombinant are comparing it to the libraries listed below
Sorting:
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 3 months ago
- SARs-CoV-2 Primer schemes☆16Updated 2 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated last month
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated 11 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆40Updated last month
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆22Updated last week
- Main development repository for SpreadGL☆18Updated 9 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated 2 years ago
- Utility to alias and dealias pango lineages☆22Updated last year
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- ☆28Updated 3 years ago
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆36Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆19Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated 3 months ago
- ☆21Updated 4 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated last year
- ☆17Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆26Updated last year
- Genome size estimation from long read overlaps☆58Updated last week
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- tree visualization for tree + annotation data☆39Updated last month
- De novo VIral Genome Annotator☆23Updated 10 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 8 months ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14Updated last year