ktmeaton / ncov-recombinantLinks
Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
☆18Updated 2 years ago
Alternatives and similar repositories for ncov-recombinant
Users that are interested in ncov-recombinant are comparing it to the libraries listed below
Sorting:
- SARs-CoV-2 Primer schemes☆16Updated 5 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- ☆29Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated last year
- ☆22Updated 7 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆28Updated 3 months ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated this week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆31Updated this week
- Main development repository for SpreadGL☆19Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated last month
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 3 weeks ago
- sunburst plots for taxonomy - working to update Krona☆40Updated 3 weeks ago
- ☆26Updated 2 years ago
- app to collapse Pango lineages for reporting☆12Updated last year
- Utility to alias and dealias pango lineages☆23Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Remove human reads from a sequencing run☆40Updated 2 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- ☆14Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated 2 weeks ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆31Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated last year
- REcombination BARcode detector.☆16Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19Updated last year