Alternatives and similar repositories for SARS2_RBD_Ab_escape_maps:

Users that are interested in SARS2_RBD_Ab_escape_maps are comparing it to the libraries listed below

• jbloomlab / SARS2-mut-fitness
  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
  ☆19Updated 2 months ago
• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆9Updated last year
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• jbloomlab / SARS2-RBD-escape-calc
  SARS-CoV-2 RBD antibody escape calculator
  ☆11Updated 2 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆37Updated 6 months ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆18Updated 7 months ago
• jbloomlab / phydms
  phylogenetic analyses informed by deep mutational scanning data
  ☆14Updated 7 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆35Updated last year
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆19Updated 3 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆20Updated 5 months ago
• neherlab / treetime_examples
  A collection of documented examples using TreeTime
  ☆20Updated 5 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆46Updated last week
• Zsailer / pyasr
  Ancestral Sequence Reconstruction in Python
  ☆13Updated 5 years ago
• biotite-dev / gecos
  Generated color schemes for sequence alignment visualizations
  ☆16Updated 2 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 4 years ago
• sanderlab / AlignmentViewer2.0
  ☆20Updated 8 months ago
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆13Updated 3 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆40Updated 2 years ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆33Updated this week
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆30Updated 3 weeks ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆25Updated 3 weeks ago
• tlawrence3 / amPEPpy
  ☆24Updated last year
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated 11 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆27Updated last year
• harmslab / gpmap
  A Python API for managing genotype-phenotype map data
  ☆11Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated 10 months ago
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated 2 weeks ago