corneliusroemer / pango-sequencesLinks
Consensus sequences for each Pango lineage
☆22Updated 4 months ago
Alternatives and similar repositories for pango-sequences
Users that are interested in pango-sequences are comparing it to the libraries listed below
Sorting:
- An open-source pathogen sequence database dedicated to equitable sharing, transparent governance, & empowering global public health.☆47Updated this week
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆38Updated last week
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆47Updated 2 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago
- Influenza data pipeline to automate genotyping assignment☆37Updated last month
- Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit☆14Updated 5 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆124Updated 3 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆74Updated 7 months ago
- ☆23Updated 8 months ago
- Strain resolver for metagenomics☆78Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆43Updated 7 months ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- Nextstrain build for avian influenza viruses☆27Updated last week
- Precise host read removal☆108Updated 2 months ago
- ☆25Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆92Updated 6 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated last month
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 3 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- Bioinformatics Pipeline and Visualization resources☆60Updated last year
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆38Updated 3 weeks ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆16Updated last month
- Split k-mer analysis – version 2☆99Updated last month
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated 2 years ago
- Reference-based consensus creation☆57Updated this week
- Fast DNA search and [host] depletion using minimizers☆88Updated last week
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆73Updated last week