CDCgov / MIRALinks
MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation
☆22Updated last month
Alternatives and similar repositories for MIRA
Users that are interested in MIRA are comparing it to the libraries listed below
Sorting:
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆19Updated last month
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- Influenza data pipeline to automate genotyping assignment☆37Updated last month
- Predict plasmids from uncorrected long read data☆41Updated 3 weeks ago
- Surveillance of pathogens using population genomics and sequencing☆52Updated last month
- Metagenomic Analysis in Real Time☆28Updated this week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆42Updated last month
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 2 months ago
- Intra-species bacterial contamination detection☆25Updated 9 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- Influenza genome analysis Nextflow workflow☆30Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆31Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14Updated last year
- Interpretative standards for AMR genotypes☆25Updated 2 weeks ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- Discover and annotate the virome☆53Updated last month
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆44Updated last month