MurrellGroup / lineagesLinks
Results from a model of global SARS-CoV-2 lineage competition
☆39Updated last month
Alternatives and similar repositories for lineages
Users that are interested in lineages are comparing it to the libraries listed below
Sorting:
- Utility to alias and dealias pango lineages☆22Updated last year
- ☆16Updated 3 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆69Updated last month
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆33Updated last week
- Efficient phylogenetic clustering of viral sequences☆87Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆43Updated 2 years ago
- Nail is an Alignment Inference tooL☆49Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆111Updated last week
- A listing of software, tools and databases useful for virome analysis☆36Updated this week
- ☆74Updated last year
- Influenza genome analysis Nextflow workflow☆28Updated 3 months ago
- ☆39Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- Consensus sequences for each Pango lineage☆22Updated 3 weeks ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 2 years ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 5 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last week
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆78Updated 9 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 3 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated last month
- The gview wiki migrated to GitHub.☆11Updated 4 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆107Updated 2 weeks ago
- Code for the paper "Learning the fitness dynamics of pathogens from phylogenies"☆19Updated 2 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- Discovery of conserved gene clusters in multiple genomes☆82Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last week