Memorablea / COVID-19-
☆11Updated 5 months ago
Alternatives and similar repositories for COVID-19-:
Users that are interested in COVID-19- are comparing it to the libraries listed below
- Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments☆30Updated this week
- ☆48Updated 2 years ago
- Informal summaries of notable SARS-CoV-2 lineages☆107Updated last week
- Datasets for https://github.com/nextstrain/nextclade☆32Updated last week
- Consensus sequences for each Pango lineage☆20Updated this week
- Official place for proposals and details around monkeypox virus lineage designations☆23Updated 2 months ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18Updated last year
- Nextstrain build for mpox virus☆45Updated this week
- Repository to propose and discuss lineages☆43Updated 2 weeks ago
- ARTIC SARS-CoV-2 workflow and reporting☆49Updated last month
- Depth-weighted De-Mixing☆107Updated this week
- serious constellations of reoccurring phylogenetically-independent origin☆39Updated last year
- Ultrafast Sample Placement on Existing Trees☆124Updated 2 months ago
- Primer schemes for real-time genome epidemiology☆27Updated last year
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆35Updated 2 years ago
- Utility to alias and dealias pango lineages☆22Updated last year
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆47Updated last month
- Nextstrain build for avian influenza viruses☆22Updated last week
- Bioinformatics Pipeline and Visualization resources☆55Updated 5 months ago
- SARs-CoV-2 Primer schemes☆15Updated last year
- ☆35Updated 5 months ago
- Rapid analysis and visualization of coronavirus genome variation☆47Updated 2 months ago
- Programmatically interact with the GISAID database.☆72Updated 4 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆48Updated 2 years ago
- Download all EpiCoV sequcnes from GISAID☆32Updated 2 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆28Updated this week
- ☆16Updated 3 months ago
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated 5 months ago
- This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course☆11Updated 6 months ago