Memorablea / COVID-19-

Related projects ⓘ

Alternatives and complementary repositories for COVID-19-

• cov-lineages / pangolin-data
  Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
  ☆29Updated last month
• W-L / ProblematicSites_SARS-CoV2
  ☆48Updated 2 years ago
• mpxv-lineages / lineage-designation
  Official place for proposals and details around monkeypox virus lineage designations
  ☆23Updated this week
• corneliusroemer / pango-sequences
  Consensus sequences for each Pango lineage
  ☆19Updated last month
• cov-lineages / scorpio
  serious constellations of reoccurring phylogenetically-independent origin
  ☆38Updated last year
• nextstrain / mpox
  Nextstrain build for mpox virus
  ☆45Updated this week
• epi2me-labs / wf-artic
  ARTIC SARS-CoV-2 workflow and reporting
  ☆49Updated last month
• artic-network / primer-schemes
  Primer schemes for real-time genome epidemiology
  ☆27Updated last year
• ktmeaton / ncov-recombinant
  Reproducible workflow for SARS-CoV-2 recombinant sequence detection.
  ☆18Updated last year
• baymlab / wastewater_analysis
  Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification
  ☆17Updated last year
• NicolaDM / MAPLE
  MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.
  ☆44Updated this week
• corneliusroemer / pango_aliasor
  Utility to alias and dealias pango lineages
  ☆21Updated 10 months ago
• yatisht / usher
  Ultrafast Sample Placement on Existing Trees
  ☆123Updated last month
• PoonLab / covizu
  Rapid analysis and visualization of coronavirus genome variation
  ☆46Updated this week
• alliblk / genepi-book
  ☆20Updated 4 months ago
• andersen-lab / avian-influenza
  Consensus sequences for U.S. H5N1 clade 2.3.4.4b
  ☆25Updated this week
• andersen-lab / bjorn
  ☆20Updated last month
• MurrellGroup / lineages
  Results from a model of global SARS-CoV-2 lineage competition
  ☆35Updated last week
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆108Updated this week
• nextstrain / nextclade_data
  Datasets for https://github.com/nextstrain/nextclade
  ☆32Updated this week
• cov-lineages / constellations
  ☆44Updated 11 months ago
• INSaFLU / INSaFLU
  INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…
  ☆32Updated last week
• nextstrain / avian-flu
  Nextstrain build for avian influenza viruses
  ☆19Updated this week
• evogytis / baltic
  baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…
  ☆94Updated last month
• roblanf / sarscov2phylo
  Global phylogenies of SARS-CoV-2 sequences
  ☆86Updated last year
• dezordi / ViralFlow
  Workflow for SARS-CoV-2 genome Assembly at FioCruz/IAM
  ☆29Updated 9 months ago
• quick-lab / SARS-CoV-2
  SARs-CoV-2 Primer schemes
  ☆15Updated last year
• connor-lab / ncov2019-artic-nf
  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…
  ☆89Updated last year
• andersen-lab / Freyja
  Depth-weighted De-Mixing
  ☆105Updated this week
• cbg-ethz / cojac
  ☆19Updated last month