MDU-PHL / pango-collapseLinks
app to collapse Pango lineages for reporting
☆12Updated last month
Alternatives and similar repositories for pango-collapse
Users that are interested in pango-collapse are comparing it to the libraries listed below
Sorting:
- ☆23Updated 10 months ago
- SARs-CoV-2 Primer schemes☆16Updated 8 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 4 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆44Updated 9 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Updated last year
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆38Updated last week
- A pipeline for bioinformatics analysis of bacterial genomes☆32Updated this week
- REcombination BARcode detector.☆16Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- Genome size estimation from long read overlaps☆80Updated last month
- µbinfie blog☆18Updated 6 months ago
- Recombination-free trees☆63Updated 4 months ago
- Remove human reads from a sequencing run☆47Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Updated 2 months ago
- ☆18Updated last year
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Colinear block visualisation tool☆31Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated 2 weeks ago
- Simple-to-use interactive comparison of two bacterial genomes☆19Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Main development repository for SpreadGL☆20Updated last year
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Updated 6 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria☆14Updated 4 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- ☆37Updated 2 weeks ago