Projects on COVID-19 topic of genomic sequencing - mostly DataViz
☆58Oct 8, 2026Updated last week
Alternatives and similar repositories for covid-19-genomes
Users that are interested in covid-19-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informal summaries of notable SARS-CoV-2 lineages☆112Jun 1, 2026Updated 4 months ago
- Interactive infographic of Global COVID-19 Vaccinations☆13May 6, 2026Updated 5 months ago
- Projects to explore detailed outbreak paths. Mostly dataviz using Power BI☆14Oct 19, 2024Updated last year
- This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course☆11Jul 5, 2024Updated 2 years ago
- Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain☆18Nov 24, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Data repository to store Canadian wastewater and other environmental surveillance data using the Environmental Surveillance for Public He…☆17Oct 7, 2026Updated last week
- Repository to propose and discuss lineages☆55Sep 30, 2026Updated 2 weeks ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated this week
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆265Updated this week
- ☆10May 28, 2023Updated 3 years ago
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States☆27Jul 17, 2024Updated 2 years ago
- ☆19Nov 24, 2025Updated 10 months ago
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20Apr 9, 2021Updated 5 years ago
- ☆16Oct 29, 2025Updated 11 months ago
- Results from a model of global SARS-CoV-2 lineage competition☆40Dec 17, 2025Updated 10 months ago
- ☆17May 12, 2023Updated 3 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- Repository for suggesting new lineages that should be added to the current scheme☆1,080Updated this week
- ☆11Aug 18, 2024Updated 2 years ago
- Depth-weighted De-Mixing☆134Updated this week
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 코로나-19 에 대한 확진/완치/사망 에 대한 국내, 해외 정보를 수집합니다. Data scrapes Covid-19 Confirmed/Cured/Deceases Cases.☆10Jun 6, 2021Updated 5 years ago
- SARs-CoV-2 Primer schemes☆16May 14, 2025Updated last year
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆33Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 4 years ago
- ☆13Feb 2, 2021Updated 5 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Aug 13, 2026Updated 2 months ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Apr 24, 2023Updated 3 years ago
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆17Nov 1, 2021Updated 4 years ago
- ☆23Sep 22, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Wastewater Epidemic Model☆15Jun 12, 2024Updated 2 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆455Sep 30, 2026Updated 2 weeks ago
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 9 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Datos y análisis de datos de pruebas moleculares y casos confirmados en Puerto Rico☆15Mar 16, 2022Updated 4 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Feb 2, 2023Updated 3 years ago