Mike-Honey / covid-19-genomesLinks
Projects on COVID-19 topic of genomic sequencing - mostly DataViz
☆55Updated this week
Alternatives and similar repositories for covid-19-genomes
Users that are interested in covid-19-genomes are comparing it to the libraries listed below
Sorting:
- A web platform to detect and analyze variants of SARS-CoV-2☆60Updated this week
- Informal summaries of notable SARS-CoV-2 lineages☆110Updated 3 months ago
- ☆27Updated 4 months ago
- ☆74Updated last year
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.☆321Updated this week
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Updated 3 years ago
- Results from a model of global SARS-CoV-2 lineage competition☆39Updated 2 months ago
- The Visualization Multitool for Molecular Epidemiology and Bioinformatics☆95Updated last week
- Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States☆27Updated last year
- SARS-CoV-2 genome data analysis☆10Updated last week
- How to set up a literature bot on Bluesky☆84Updated last year
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆443Updated 2 weeks ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Updated 3 weeks ago
- Real-time tracking of influenza evolution☆88Updated 2 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- The Nextstrain website☆97Updated last week
- Analysis of EBOV genome sequence from Guinea, Sierra Leone and Liberia from 2014-2016☆59Updated 7 years ago
- A tool for exploring large trees in the browser☆118Updated 2 weeks ago
- Store of the trained model for pangolin to access.☆55Updated 3 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al., submitted)☆37Updated 2 weeks ago
- Collection template and associated materials for SARS-CoV-2 metadata☆35Updated 2 years ago
- ☆226Updated this week
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial propertie…☆103Updated last month
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13Updated 2 years ago
- Resources for Influenza Research☆23Updated 3 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆36Updated last week