Projects on COVID-19 topic of genomic sequencing - mostly DataViz
☆58Nov 1, 2026Updated this week
Alternatives and similar repositories for covid-19-genomes
Users that are interested in covid-19-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Informal summaries of notable SARS-CoV-2 lineages☆112Jun 1, 2026Updated 5 months ago
- DataViz on Australian COVID-19 Vaccinations and related statistics☆13Oct 29, 2026Updated last week
- This is a repository for development of the SARS-CoV-2 Bioinformatics for Beginners Course☆11Jul 5, 2024Updated 2 years ago
- Results from a model of global SARS-CoV-2 lineage competition☆40Dec 17, 2025Updated 10 months ago
- SARS-Cov-2 Recombinant Finder for fasta sequences☆50Jun 22, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Data repository to store Canadian wastewater and other environmental surveillance data using the Environmental Surveillance for Public He…☆17Updated this week
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Mar 5, 2023Updated 3 years ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- A web platform to detect and analyze variants of SARS-CoV-2☆60Oct 12, 2026Updated 3 weeks ago
- Repository to propose and discuss lineages☆54Oct 18, 2026Updated 2 weeks ago
- A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV…☆37Oct 15, 2026Updated 3 weeks ago
- ☆10May 28, 2023Updated 3 years ago
- Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement☆265Updated this week
- Course materials for an introduction to SARS-CoV-2 sequencing data analysis☆14Aug 15, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Summarise nucleotide counts at a set of positions in a BAM file to search for mixtures☆13Apr 5, 2022Updated 4 years ago
- ☆19Nov 24, 2025Updated 11 months ago
- ☆16Oct 29, 2025Updated last year
- Store of the trained model for pangolin to access.☆55Oct 4, 2022Updated 4 years ago
- Repository for suggesting new lineages that should be added to the current scheme☆1,081Oct 28, 2026Updated last week
- ☆20Apr 9, 2021Updated 5 years ago
- ☆11Aug 18, 2024Updated 2 years ago
- Programmatically interact with the GISAID database.☆83Aug 5, 2025Updated last year
- Datasets for https://github.com/nextstrain/nextclade☆47Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Depth-weighted De-Mixing☆134Updated this week
- Polling analysis and forecast projections for Australian elections☆12Updated this week
- The repository for the Viral Genomics and Bioinformatics 2022 course☆11Jul 5, 2024Updated 2 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated this week
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 4 years ago
- Code to replicate 'Quantifying impacts of the COVID-19 pandemic through life expectancy losses: a population-level study of 29 countries'☆16Nov 1, 2021Updated 5 years ago
- Identify Variants of Concern from metagenomic samples of SARS-CoV-2☆13Sep 9, 2021Updated 5 years ago
- Mpox 2022 repository☆174Apr 1, 2024Updated 2 years ago
- An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2☆33Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- ☆23Sep 22, 2026Updated last month
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated last month
- Ultrafast Sample Placement on Existing Trees☆141Jun 1, 2026Updated 5 months ago
- A COVID-19 CoV Genetics (CG) browser to inform therapeutics development☆26Jan 12, 2026Updated 9 months ago
- Software package for assigning SARS-CoV-2 genome sequences to global lineages.☆455Sep 30, 2026Updated last month
- Simple Manipulation Of Trees☆13Aug 16, 2025Updated last year