artic-network / primer-schemes
Primer schemes for real-time genome epidemiology
☆27Updated last year
Alternatives and similar repositories for primer-schemes:
Users that are interested in primer-schemes are comparing it to the libraries listed below
- Standard database for the TBProfiler tool☆29Updated this week
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆28Updated 7 months ago
- SC2 variant detection and composition pipeline☆16Updated last year
- ☆35Updated last week
- ☆79Updated last year
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆42Updated 6 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 5 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Harmonization of AMR predictor tool outputs☆23Updated last month
- Split k-mer analysis – version 2☆75Updated last week
- whole genome MLST analysis☆40Updated 9 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Updated 6 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆72Updated last year
- Precise host read removal☆84Updated 2 months ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 5 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated last month
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆30Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 3 months ago
- IS mapping software☆53Updated 3 years ago
- Bifrost graph gene caller.☆91Updated 5 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 10 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Updated last year