artic-network / primer-schemes
Primer schemes for real-time genome epidemiology
☆27Updated last year
Alternatives and similar repositories for primer-schemes:
Users that are interested in primer-schemes are comparing it to the libraries listed below
- ☆35Updated last week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated 9 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated 8 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- Gene-flank analysis tool☆27Updated 4 months ago
- IS mapping software☆53Updated 3 years ago
- Select primer sets for selective whole genome amplification (SWGA)☆32Updated 6 years ago
- SC2 variant detection and composition pipeline☆17Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- ☆36Updated 3 years ago
- ☆81Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Recombination-free trees☆57Updated 3 weeks ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Bifrost graph gene caller.☆93Updated 6 months ago
- InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..☆30Updated last year
- Calculate confidence scores from Kraken2 output☆22Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆48Updated 2 years ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 7 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- Standard database for the TBProfiler tool☆29Updated last month
- Harmonization of AMR predictor tool outputs☆25Updated 3 months ago
- Split k-mer analysis – version 2☆81Updated 2 months ago
- A SARS-CoV-2 Mutation Pattern Query Tool☆17Updated 2 years ago