UPHL-BioNGS / Grandeur

Related projects ⓘ

Alternatives and complementary repositories for Grandeur

• DOH-JDJ0303 / bigbacter-nf
  ☆19Updated last week
• CFSAN-Biostatistics / shigatyper
  CFSAN Shigella Typing Pipeline
  ☆14Updated last year
• UPHL-BioNGS / Donut_Falls
  Basic workflow for nanopore sequencing data
  ☆14Updated 2 weeks ago
• tseemann / cgmlst-dists
  🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables
  ☆27Updated last year
• andrewjpage / tiptoft
  Predict plasmids from uncorrected long read data
  ☆39Updated 4 years ago
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆37Updated this week
• bioinfo-ut / PlasmidSeeker
  A k-mer based program for the identification of known plasmids from whole-genome sequencing reads
  ☆35Updated 3 years ago
• typhoidgenomics / genotyphi
  Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
  ☆22Updated last month
• theiagen / public_health_bacterial_genomics
  ☆27Updated last year
• andrewjpage / krocus
  Predict MLST directly from uncorrected long reads
  ☆25Updated 2 years ago
• insapathogenomics / ReporTree
  A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
  ☆29Updated last month
• USDA-VS / GenoFLU
  Influenza data pipeline to automate genotyping assignment
  ☆22Updated 3 weeks ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆25Updated last week
• rrwick / Verticall
  Recombination-free trees
  ☆56Updated last year
• phac-nml / sistr_cmd
  SISTR (Salmonella In Silico Typing Resource) command-line tool
  ☆25Updated last month
• gbouras13 / pypolca
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA
  ☆28Updated 2 months ago
• LaborBerlin / score-assemblies
  Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
  ☆24Updated 7 months ago
• pha4ge / hAMRonization_workflow
  Harmonization of AMR predictor tool outputs
  ☆21Updated last year
• drpowell / FriPan
  Interactive, web tool for exploring pan-genome of bacterial strains
  ☆45Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆25Updated 3 weeks ago
• quadram-institute-bioscience / socru
  Order and orientation of complete bacterial genomes
  ☆27Updated 11 months ago
• bvalot / pyMLST
  whole genome MLST analysis
  ☆38Updated 6 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated 2 weeks ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 3 weeks ago
• OLC-Bioinformatics / ConFindr
  Intra-species bacterial contamination detection
  ☆22Updated this week
• MDU-PHL / bohra
  A pipeline for bioinformatics analysis of bacterial genomes
  ☆19Updated 4 months ago
• klebgenomics / Kaptive
  ☆44Updated 2 weeks ago
• simonrharris / SKA
  Split Kmer Analysis
  ☆63Updated 2 years ago
• kwongj / maskrc-svg
  Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG
  ☆19Updated 5 years ago