UPHL-BioNGS / GrandeurLinks
UPHL's Reference Free Pipeline
☆26Updated 3 weeks ago
Alternatives and similar repositories for Grandeur
Users that are interested in Grandeur are comparing it to the libraries listed below
Sorting:
- Basic workflow for nanopore sequencing data☆16Updated this week
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Bacterial surveillance pipeline.☆24Updated 3 weeks ago
- CFSAN Shigella Typing Pipeline☆14Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated 3 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Calculate assocations between genes and traits☆23Updated 2 months ago
- A simple pipeline for bacterial assembly and quality control☆17Updated 2 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated last month
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- REcombination BARcode detector.☆13Updated last year
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- Recombination-free trees☆58Updated 2 months ago
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Updated 7 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆36Updated 6 months ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- ASMNGS20 - 2020 Conference Details☆15Updated 2 years ago
- Extracts contigs harbouring a target gene / sequence from assemblies and aligns the contigs around the target sequence☆13Updated 7 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated this week
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 10 months ago
- ☆10Updated last month
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆36Updated 2 months ago
- emm Automatic Isolate Labeller☆11Updated 2 months ago
- Plasmid analysis using rearrangement distances☆42Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆36Updated 2 weeks ago