tomwenseleers / LineageExplorerLinks
Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline fits
☆25Updated 2 years ago
Alternatives and similar repositories for LineageExplorer
Users that are interested in LineageExplorer are comparing it to the libraries listed below
Sorting:
- Tools for evolutionary forecasting☆14Updated this week
- Disease outbreak reconstruction from epidemiological and genetic data☆35Updated last month
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 months ago
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 8 months ago
- An Amazing Shiny App☆16Updated 4 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 6 years ago
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆48Updated 4 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- babette is an R package to work with BEAST2☆46Updated last month
- Inference framework for serological data☆19Updated last week
- ☆19Updated 4 years ago
- Tools to make it easy to work with microtiter plate-shaped data☆24Updated last year
- Pathogen evolution, selection and immunity☆45Updated last year
- A course in the theory and practice of phylogenetic inference from DNA sequence data☆31Updated last week
- Dendrograms for Evolutionary Analysis☆12Updated 6 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆57Updated last month
- A Toolbox for Manipulating Biological Sequences in R☆26Updated 4 months ago
- ☆19Updated 3 months ago
- Analysis of Phylogenetics and Evolution☆73Updated this week
- a take on ordination plots using ggplot2☆65Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 6 months ago
- tidy processing of biological sequences in R☆44Updated last year
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆70Updated last year