tomwenseleers / LineageExplorerLinks
Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline fits
☆25Updated 2 years ago
Alternatives and similar repositories for LineageExplorer
Users that are interested in LineageExplorer are comparing it to the libraries listed below
Sorting:
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- Tools for evolutionary forecasting☆14Updated last month
- Racmacs R package for performing antigenic cartography☆24Updated last year
- An Amazing Shiny App☆17Updated 4 years ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 months ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- ☆19Updated last week
- Metagenomics calibration R package☆20Updated 3 years ago
- A textbook for phylogenetic comparative methods.☆44Updated 6 years ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- babette is an R package to work with BEAST2☆46Updated this week
- Utilities and distributions for (birth-death) skyline models.☆10Updated 6 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- Calculate distances between phylogenetic trees in R☆34Updated 2 weeks ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆48Updated 3 years ago
- R package to run BEAST2☆11Updated 2 months ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 6 years ago
- Ordination lectures for Ecological Methods in Oulu☆19Updated last year
- Coalescent simulation and likelihood for phylodynamic inference☆14Updated 5 months ago
- ☆11Updated 5 months ago
- Pathogen evolution, selection and immunity☆45Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated 2 years ago
- Tools to make it easy to work with microtiter plate-shaped data☆24Updated last year
- ☆19Updated last month
- A Toolbox for Manipulating Biological Sequences in R☆26Updated last month
- Inference framework for serological data☆19Updated last month
- Analysis of Phylogenetics and Evolution☆73Updated 4 months ago
- Computes affinity between two entities based on their co-occurrence☆27Updated 4 months ago