stemangiola / CuratedAtlasQueryR
Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
☆90Updated 3 months ago
Alternatives and similar repositories for CuratedAtlasQueryR:
Users that are interested in CuratedAtlasQueryR are comparing it to the libraries listed below
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 8 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- R package for semi-supervised single-cell data integration☆81Updated 3 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated 2 months ago
- Normalize CITEseq Data☆65Updated last week
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆102Updated last week
- ☆61Updated last year
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆100Updated last week
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- ☆54Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆101Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- ☆61Updated 9 months ago
- Pan-Cancer Single Cell Classifier☆66Updated 10 months ago
- ☆79Updated last year
- Cell type pipes for R☆51Updated last year
- Unified access to several second-generation deconvolution methods☆69Updated last week
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- R package for Protein activity analysis of single-cell RNAseq.☆81Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Latent Embedding Multivariate Regression☆87Updated 4 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆45Updated 2 weeks ago
- Create stacked violin plot☆46Updated 3 years ago