stemangiola / CuratedAtlasQueryRLinks
Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
☆93Updated last year
Alternatives and similar repositories for CuratedAtlasQueryR
Users that are interested in CuratedAtlasQueryR are comparing it to the libraries listed below
Sorting:
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated last month
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆117Updated last week
- Normalize CITEseq Data☆66Updated last month
- Cell type pipes for R☆52Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated last week
- Latent Embedding Multivariate Regression☆97Updated last year
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- R package for single cell and other data analysis using diffusion maps☆92Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆39Updated last month
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 8 months ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆134Updated 5 months ago
- Various utility functions for Seurat v5 single-cell analysis☆56Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆92Updated 6 months ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated 3 months ago
- ☆55Updated 5 years ago
- ☆74Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- From geospatial to spatial -omics☆99Updated 3 weeks ago
- R package for semi-supervised single-cell data integration☆91Updated last week
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- An R interface to enrichR☆93Updated 10 months ago