Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
☆93Dec 18, 2024Updated last year
Alternatives and similar repositories for CuratedAtlasQueryR
Users that are interested in CuratedAtlasQueryR are comparing it to the libraries listed below
Sorting:
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 4 months ago
- Easy single cell analysis platform for enrichment☆216Jan 4, 2026Updated 2 months ago
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 7 months ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆292Mar 5, 2026Updated 2 weeks ago
- An R package for visualising cell-cell interactions☆46Updated this week
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆24Dec 12, 2025Updated 3 months ago
- Seurat meets tidyverse. The best of both worlds.☆162Mar 3, 2026Updated 2 weeks ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆31Jul 13, 2023Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆313Dec 19, 2025Updated 3 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆221Mar 8, 2026Updated last week
- Label elements within user drawn gates☆25Oct 10, 2025Updated 5 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- R package for Pathway RespOnsive GENe activity inference☆118Jan 30, 2023Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆47Jun 12, 2023Updated 2 years ago
- R package for analysing single cell data☆63Dec 8, 2022Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 7 months ago
- Latent Embedding Multivariate Regression☆100Feb 18, 2026Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 3 months ago
- The blog of tidyomics☆14Jul 12, 2025Updated 8 months ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆122Feb 23, 2026Updated 3 weeks ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 2 months ago
- A toolkit for single-cell immune profiling☆365Mar 9, 2026Updated last week
- A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and …☆32Jul 25, 2023Updated 2 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆40Jan 10, 2026Updated 2 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆630Mar 11, 2026Updated last week
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- ☆17Oct 17, 2023Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Oct 20, 2020Updated 5 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 6 months ago
- NicheNet: predict active ligand-target links between interacting cells☆630Nov 12, 2025Updated 4 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 3 months ago
- ☆13Feb 17, 2022Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆234Aug 7, 2024Updated last year
- Easy to use encryption tools for R☆18Jan 31, 2025Updated last year
- ☆10Jan 21, 2023Updated 3 years ago