Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
☆93Dec 18, 2024Updated last year
Alternatives and similar repositories for CuratedAtlasQueryR
Users that are interested in CuratedAtlasQueryR are comparing it to the libraries listed below
Sorting:
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 3 months ago
- Easy single cell analysis platform for enrichment☆214Jan 4, 2026Updated last month
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 7 months ago
- An R package for visualising cell-cell interactions☆46Aug 14, 2024Updated last year
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆23Dec 12, 2025Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆289Feb 18, 2026Updated last week
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Apr 14, 2019Updated 6 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Jul 13, 2023Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆420Sep 4, 2025Updated 5 months ago
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated last week
- R package for Pathway RespOnsive GENe activity inference☆115Jan 30, 2023Updated 3 years ago
- A GenePattern module for running the ssGSEA method☆14Mar 3, 2025Updated 11 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆47Oct 13, 2025Updated 4 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆47Jun 12, 2023Updated 2 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆18Sep 16, 2021Updated 4 years ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 2 months ago
- R package for analysing single cell data☆62Dec 8, 2022Updated 3 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆626Nov 28, 2025Updated 3 months ago
- Tutorial for the analysis of scRNA-seq data in R☆18Aug 28, 2018Updated 7 years ago
- ☆17Oct 17, 2023Updated 2 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- Latent Embedding Multivariate Regression☆100Feb 18, 2026Updated last week
- Implementation of the matrixStats API for sparse matrices☆54Apr 2, 2025Updated 10 months ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆119Feb 21, 2026Updated last week
- Scaling Single Cell Analysis to Millions of Cells☆262Jan 13, 2026Updated last month
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 5 months ago
- Seurat meets tidyverse. The best of both worlds.☆162Updated this week
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 8 years ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆40Jan 10, 2026Updated last month
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 8 months ago
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 6 months ago
- A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and …☆32Jul 25, 2023Updated 2 years ago