stemangiola / CuratedAtlasQueryRLinks
Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
☆92Updated 10 months ago
Alternatives and similar repositories for CuratedAtlasQueryR
Users that are interested in CuratedAtlasQueryR are comparing it to the libraries listed below
Sorting:
- Normalize CITEseq Data☆66Updated 6 months ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆112Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆73Updated this week
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆129Updated 3 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 6 months ago
- ☆73Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆79Updated 4 months ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- Latent Embedding Multivariate Regression☆95Updated 11 months ago
- Cell type pipes for R☆52Updated last year
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- An R interface to enrichR☆93Updated 8 months ago
- ☆55Updated 4 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated last month
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 2 weeks ago
- Pan-Cancer Single Cell Classifier☆82Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- Collection of cell type reference datasets.☆61Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆33Updated 5 months ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 11 months ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated 3 weeks ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- Various utility functions for Seurat single-cell analysis☆53Updated last week
- An r package that works as a wrapper to homologene☆46Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago