Inference of TCR motifs
☆32Jun 17, 2025Updated 8 months ago
Alternatives and similar repositories for cell2tcr
Users that are interested in cell2tcr are comparing it to the libraries listed below
Sorting:
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 6 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 6 months ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Using TCR and expression for sequence embedding☆62Jan 6, 2026Updated last month
- ☆44Oct 30, 2024Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆34Nov 18, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- ☆18Apr 20, 2025Updated 10 months ago
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 7 months ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Feb 1, 2024Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Feature selection for preserving biological trajectories in single-cell data☆20May 29, 2025Updated 9 months ago
- scWGCNA☆63Nov 8, 2022Updated 3 years ago
- An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis☆14Apr 5, 2025Updated 10 months ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- ☆41Jun 24, 2025Updated 8 months ago
- ☆11May 11, 2024Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆124Updated this week
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 2 months ago
- Blood Transcription Modules for interpreting blood transcriptomics data☆11Nov 25, 2024Updated last year
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- The Singularity Community Catalog of Singularity* recipe files.☆11Oct 27, 2025Updated 4 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- Finding gene expression states in scRNA-seq data☆50Mar 22, 2024Updated last year
- Identifying cell subpopulational differences among single-cell biospecimens☆15Sep 27, 2024Updated last year
- omics data analysis using clusterProfiler ;)☆15Jun 6, 2024Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated this week
- Complex Heatmaps Using Base Graphics☆14Apr 24, 2023Updated 2 years ago
- R package for analysing single cell data☆63Dec 8, 2022Updated 3 years ago
- Fast, accurate and scalable normalization for RNA sequencing data with the RUVprps software package.☆12Feb 23, 2026Updated last week
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Jul 23, 2025Updated 7 months ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- ☆206Dec 6, 2025Updated 2 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 4 years ago
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 4 months ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year