Teichlab / cell2tcrLinks
Inference of TCR motifs
☆32Updated 4 months ago
Alternatives and similar repositories for cell2tcr
Users that are interested in cell2tcr are comparing it to the libraries listed below
Sorting:
- ☆44Updated 11 months ago
- Using TCR and expression for sequence embedding☆59Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 6 months ago
- R package for the analysis of single-cell immune repertoires☆43Updated 8 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 6 years ago
- ☆39Updated 4 years ago
- ☆20Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆32Updated last month
- ☆32Updated 9 months ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Code related to the Celligner manuscript☆46Updated 4 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆37Updated 6 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Python package with CLI for the analysis of single cell methylation data.☆15Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆29Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- ☆24Updated 2 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- ☆48Updated last year
- Using BCR and expression for sequence embedding☆25Updated last week
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated last month
- Signac☆25Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year