rthurman / hotspotLinks
Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.
☆16Updated 11 years ago
Alternatives and similar repositories for hotspot
Users that are interested in hotspot are comparing it to the libraries listed below
Sorting:
- Chromatin segmentation in R☆19Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Applying IDR analysis to Homer peaks.☆15Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- ☆13Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- ☆16Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- DriverPower☆26Updated 11 months ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Updated 7 years ago
- Enriched Domain Detector for ChIP-seq data☆16Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- Visualization tool for temporal clonal evolution.☆18Updated 5 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago