Alternatives and similar repositories for VarSifter

Users that are interested in VarSifter are comparing it to the libraries listed below

• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆19Updated last year
• gatk-workflows / gatk4-mitochondria-pipeline
  This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…
  ☆22Updated 5 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆37Updated last year
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆57Updated 3 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆47Updated this week
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated 2 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆17Updated last month
• Sentieon / sentieon-models
  Model files for Sentieon variant callers
  ☆16Updated last month
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆29Updated 11 months ago
• SD-Genomics / DeviCNV
  Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data
  ☆17Updated 3 years ago
• WGLab / RepeatHMM
  a hidden Markov model to infer simple repeats from genome sequences
  ☆37Updated 4 years ago
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated last year
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated 2 months ago
• GeneDx / scramble
  ☆39Updated last year
• ikalatskaya / ISOWN
  ☆46Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆26Updated last year
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 10 months ago
• fakedrtom / SVAFotate
  ☆41Updated 9 months ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated 11 months ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆30Updated 5 years ago
• bioinformatics-IBCH / Comparison-study-of-germline-CNV-calling-tools
  ☆16Updated 3 years ago
• vgteam / vg_wdl
  Workflow Description Language (WDL) scripts for common vg workflows
  ☆20Updated last month
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆43Updated 8 months ago
• KolmogorovLab / minda
  ☆19Updated 2 months ago