☆54Jan 22, 2026Updated 8 months ago
Alternatives and similar repositories for docker
Users that are interested in docker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last week
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 8 months ago
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 8 years ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- ☆23Apr 2, 2026Updated 6 months ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 3 months ago
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- ☆14May 31, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- ☆20Jul 3, 2022Updated 4 years ago
- ncbi-vdb☆104Updated this week
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆22Updated this week
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Repo for PrimerSchemes☆20Sep 14, 2026Updated 3 weeks ago
- 🍶 Genome assembly with short sequence reads☆28Sep 14, 2026Updated 3 weeks ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆56Apr 1, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NGS Language Bindings☆123Dec 6, 2023Updated 2 years ago
- Primer schemes for real-time genome epidemiology☆31Jun 14, 2023Updated 3 years ago
- IGV Web App☆130Sep 28, 2026Updated last week
- k-mers and the like☆22Oct 4, 2026Updated last week
- Useful tricks and tipps for Galaxy users☆12Nov 17, 2022Updated 3 years ago
- ☆11Oct 23, 2025Updated 11 months ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Updated this week
- Random utility scripts for genomics data☆12Feb 22, 2021Updated 5 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Aug 28, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Sequana: a set of Snakemake NGS pipelines☆151Oct 5, 2026Updated last week
- ☆22Jun 1, 2026Updated 4 months ago
- ☆16Jan 10, 2023Updated 3 years ago
- viral-ngs: complete pipelines☆75Oct 2, 2026Updated last week
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Oct 2, 2026Updated last week
- ☆14Feb 12, 2024Updated 2 years ago