☆54Jan 22, 2026Updated 7 months ago
Alternatives and similar repositories for docker
Users that are interested in docker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 4 months ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 7 months ago
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 7 years ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 2 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- ☆23Apr 2, 2026Updated 4 months ago
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 10 months ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Mar 7, 2013Updated 13 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆52Apr 25, 2025Updated last year
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated last month
- The NCBI SARS-CoV-2 Variant Calling (SC2VC) Pipeline allows calling high-confidence variants from SARS-CoV-2 NGS data in a standardized f…☆14Apr 21, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 4 months ago
- ☆20Jul 3, 2022Updated 4 years ago
- ncbi-vdb☆103Updated this week
- 🍶 Genome assembly with short sequence reads☆26Jun 4, 2026Updated 2 months ago
- The Antibiotic Resistance Ontology (ARO) organizes the information describing the ability of a microorganism to withstand the effects of …☆22Aug 13, 2026Updated 2 weeks ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- Repo for PrimerSchemes☆20Jul 6, 2026Updated last month
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Apr 1, 2025Updated last year
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NGS Language Bindings☆123Dec 6, 2023Updated 2 years ago
- Primer schemes for real-time genome epidemiology☆31Jun 14, 2023Updated 3 years ago
- IGV Web App☆129Aug 21, 2026Updated last week
- k-mers and the like☆23Aug 9, 2026Updated 3 weeks ago
- The Ensembl Variation Perl API and SQL schema☆30Aug 3, 2026Updated 3 weeks ago
- Useful tricks and tipps for Galaxy users☆12Nov 17, 2022Updated 3 years ago
- ☆11Oct 23, 2025Updated 10 months ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Aug 17, 2026Updated 2 weeks ago
- Random utility scripts for genomics data☆12Feb 22, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Updated this week
- Sequana: a set of Snakemake NGS pipelines☆151Updated this week
- ☆22Jun 1, 2026Updated 3 months ago
- ☆16Jan 10, 2023Updated 3 years ago
- viral-ngs: complete pipelines☆75Aug 7, 2026Updated 3 weeks ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago