Alternatives and similar repositories for GeneAgent

Users that are interested in GeneAgent are comparing it to the libraries listed below

• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆56Updated 5 months ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆63Updated last month
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆28Updated 11 months ago
• SpielmannLab / STIGMA
  ☆10Updated 2 weeks ago
• bm2-lab / MUSIC
  model-based understanding of single-cell CRISPR screening
  ☆25Updated 10 months ago
• idekerlab / llm_evaluation_for_gene_set_interpretation
  Code space for 'Evaluation of large language models for discovery of gene set function'
  ☆40Updated 10 months ago
• secrierlab / SpottedPy
  Hotspot cluster distance analysis in spatial transcriptomic data
  ☆33Updated 9 months ago
• labomics / midas
  PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).
  ☆59Updated 2 months ago
• ai4nucleome / BioMaster
  ☆72Updated this week
• yxwucq / scExtract
  Automatic annotation of single-cell RNA-seq data from the literature
  ☆38Updated 3 months ago
• jshilts / shilts-et-al-2022-immunoreceptors
  Supporting data files and code for the publication by Shilts et al.
  ☆31Updated 3 years ago
• altoslabs / perturbench
  ☆55Updated 3 weeks ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated 3 weeks ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• TebaldiLab / cellmarkeraccordion
  ☆13Updated this week
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆57Updated last year
• biomed-AI / CellFM
  ☆85Updated 2 months ago
• datapplab / AutoClass
  ☆44Updated 3 years ago
• lanagarmire / Asgard
  ☆44Updated last year
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆112Updated this week
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆42Updated last week
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• czi-ai / transcriptformer
  ☆90Updated this week
• BGIResearch / BioLLM
  ☆27Updated 6 months ago
• pathint / reoa
  Relative Expression Ordering Analysis (REOA) package
  ☆21Updated 2 years ago
• rajewsky-lab / openst
  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
  ☆106Updated 4 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 5 months ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆30Updated 11 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆93Updated 2 months ago