The code for gene set analysis by accessing domain databases
☆114Dec 25, 2025Updated 6 months ago
Alternatives and similar repositories for GeneAgent
Users that are interested in GeneAgent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆34Apr 9, 2025Updated last year
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated last week
- ☆51May 18, 2026Updated last month
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- GWAS genetics Fine-mapping method☆18May 17, 2024Updated 2 years ago
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- ☆61Feb 13, 2026Updated 4 months ago
- Antibody-Specific Epitope Mapping☆19Sep 10, 2025Updated 9 months ago
- ☆22Jul 22, 2025Updated 11 months ago
- ☆17Mar 5, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 3 weeks ago
- ☆19May 23, 2025Updated last year
- Generating UTRs from SHort Reads☆12Sep 28, 2020Updated 5 years ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 7 months ago
- DEGAS is an R package that can be used to prioritize cells in relation to disease.☆14Nov 6, 2024Updated last year
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Spatial Single Cell transcriptomic library☆22Jan 15, 2026Updated 5 months ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆22May 4, 2026Updated 2 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆62May 19, 2025Updated last year
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Oct 31, 2024Updated last year
- ☆15Feb 6, 2023Updated 3 years ago
- Highly informative TCR representation model☆16Nov 26, 2025Updated 7 months ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated last month
- ☆12Jan 8, 2026Updated 6 months ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆20Apr 24, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Software used to develop the TCMA database associated with 10.1016/j.chom.2020.12.001.☆15Nov 26, 2023Updated 2 years ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆19Sep 16, 2021Updated 4 years ago
- ☆15Feb 12, 2026Updated 4 months ago
- A positive-unlabeled ensemble learning framework for disease gene prioritization.☆21Nov 10, 2025Updated 7 months ago
- ☆28May 26, 2026Updated last month
- 🔬 R package: Analysis of Large Affymetrix Microarray Data Sets☆12Dec 14, 2025Updated 6 months ago