jianhuupenn / MorphLinkLinks
MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics
☆16Updated last month
Alternatives and similar repositories for MorphLink
Users that are interested in MorphLink are comparing it to the libraries listed below
Sorting:
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 5 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆107Updated last week
- ☆52Updated 3 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Updated 9 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- ☆40Updated this week
- ☆15Updated 2 months ago
- ☆35Updated this week
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 10 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 5 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- Bayesian Analytics for Spatial Segmentation☆30Updated 8 months ago
- ☆15Updated 6 months ago
- A public MuSpAn page for community discussions and issue reporting.☆18Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 11 months ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆42Updated 2 months ago
- CAST package☆42Updated last year
- ☆60Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆40Updated last year
- Interactive applications of stlearn☆15Updated 2 years ago
- ☆32Updated 10 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆29Updated 2 years ago
- ☆27Updated 2 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 10 months ago