jianhuupenn / MorphLinkLinks
MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics
☆16Updated 2 weeks ago
Alternatives and similar repositories for MorphLink
Users that are interested in MorphLink are comparing it to the libraries listed below
Sorting:
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆26Updated 7 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆30Updated 3 months ago
- ☆50Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆61Updated 2 weeks ago
- ☆15Updated 4 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆33Updated 7 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 3 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Updated 7 months ago
- ☆66Updated this week
- Bayesian Analytics for Spatial Segmentation☆30Updated 6 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆63Updated 4 months ago
- ☆31Updated 8 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 8 months ago
- ☆35Updated last week
- CAST package☆40Updated last year
- ☆13Updated this week
- ☆39Updated last year
- ☆60Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆38Updated last year
- ☆56Updated last year
- Spatial direct messaging detected by bivariate Moran☆31Updated 3 months ago
- ☆40Updated 2 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆47Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA