MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics
☆18Dec 7, 2025Updated 7 months ago
Alternatives and similar repositories for MorphLink
Users that are interested in MorphLink are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 24, 2024Updated 2 years ago
- ☆37Oct 22, 2025Updated 9 months ago
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆19Feb 5, 2023Updated 3 years ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆50Oct 22, 2025Updated 9 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆13May 28, 2025Updated last year
- TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems☆20May 16, 2026Updated 2 months ago
- Fine-grained Spatial Transcriptomics by integrating paired histology image☆25Mar 30, 2026Updated 3 months ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated last year
- A large scale benchmark for cross-modal learning of histology and spatial expressions☆24Oct 28, 2025Updated 8 months ago
- ☆17Jul 8, 2024Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 6 years ago
- CAST package☆44Oct 26, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- ☆28Apr 29, 2026Updated 2 months ago
- ☆20Sep 19, 2025Updated 10 months ago
- ☆20Oct 28, 2025Updated 8 months ago
- ☆14Jun 10, 2025Updated last year
- R tool to analyse and integrate multiple -omics data☆16Jan 4, 2026Updated 6 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆35Jul 24, 2025Updated last year
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- ☆17Jul 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code used to process the data of the HBCA project☆33Feb 9, 2024Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 8 months ago
- Transformer Based Embeddings of Wasserstein Distance☆26Feb 18, 2026Updated 5 months ago
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 5 months ago
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆18May 19, 2025Updated last year
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Updated this week
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 11 months ago
- ☆15May 24, 2025Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 4 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- Single-cell data analysis☆16May 24, 2026Updated 2 months ago
- ☆89Jun 2, 2026Updated last month
- QuPath extension to run StarDist nucleus detection☆48Jun 25, 2026Updated last month
- Spatial Single-Cell Analysis Toolkit☆113Mar 11, 2026Updated 4 months ago
- ☆14Mar 17, 2026Updated 4 months ago