Python package for analyzing and visualizing iModulons
☆16Jul 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for pymodulon
Users that are interested in pymodulon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-fidelity E. coli RNA-seq compendium☆33Mar 5, 2021Updated 5 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆18Feb 29, 2024Updated 2 years ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Jan 14, 2020Updated 6 years ago
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated 2 years ago
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆32Nov 7, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)☆20May 12, 2025Updated last year
- ☆11May 3, 2017Updated 9 years ago
- Uncover organisms' metabolic blueprints☆18Jun 18, 2024Updated 2 years ago
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Nov 30, 2021Updated 4 years ago
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Jul 28, 2026Updated 2 weeks ago
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 7 years ago
- A set of tools to analyse the output from TraDIS analyses☆25Jun 15, 2026Updated last month
- Package that facilitates pulling database entries from KEGG via its REST API☆14Jun 9, 2026Updated 2 months ago
- An Open-Source web application to plan and document cloning and genome engineering☆55Jun 5, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- A complete Snakemake pipeline for detecting allele specific expression in RNA-seq☆10Jul 10, 2021Updated 5 years ago
- Bad link reporter for GitHub repositories☆13Aug 3, 2026Updated last week
- GLASS consortium☆14May 31, 2022Updated 4 years ago
- Python package aimed at automatic identification of electron and hole transfer pathways in proteins.☆13Feb 17, 2026Updated 5 months ago
- ☆13Dec 17, 2025Updated 7 months ago
- Short overhangs design for DNA assembly☆15Jun 8, 2022Updated 4 years ago
- OBO Metadata Ontology☆26Mar 17, 2026Updated 4 months ago
- ☆15Jun 19, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆33May 31, 2023Updated 3 years ago
- BSMS205 Genetics☆19Apr 17, 2020Updated 6 years ago
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Poreblazer is a set of Fortran 90 tools for structural characterization of porous materials.☆13Feb 28, 2018Updated 8 years ago
- reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)☆14Nov 19, 2019Updated 6 years ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆17Mar 27, 2024Updated 2 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated 2 years ago
- Semantic prefix map registry☆14Jul 2, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Javascript package for embedding sequence logos☆19Jun 16, 2025Updated last year
- Enzyme kinetics data extraction pipeline☆17Jul 17, 2026Updated 3 weeks ago
- MoSDeF-GOMC: Python software for the creation of scientific workflows for the Monte Carlo simulation engine GOMC☆17Updated this week
- This python code creates hybrid MD/MC (NAMD/GOMC) simulations for the NVT, NPT, GCMC, and GEMC-NVT ensembles☆49Updated this week
- Models, design algorithms, and other software related to Salis lab publications☆38Aug 5, 2026Updated last week
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆16Jun 19, 2023Updated 3 years ago
- Discontinuous Molecular Dynamics (DMD) Simulation Package☆16Jun 8, 2026Updated 2 months ago