SBRG / pymodulon
Python package for analyzing and visualizing iModulons
☆13Updated last month
Alternatives and similar repositories for pymodulon:
Users that are interested in pymodulon are comparing it to the libraries listed below
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated last month
- Comprehensive Python client for the Uniprot REST API☆49Updated 8 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆26Updated 4 months ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆32Updated 2 years ago
- Absolute quantification package based on quantms.io☆14Updated 3 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated last week
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆44Updated last week
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- An automated model test system for synthetic biology models of gene expression and regulation.☆15Updated 4 years ago
- Template-based RNA secondary structure visualization☆26Updated 5 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆21Updated last week
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆10Updated last year
- A 3-Dimensional View of Human Metabolism and Disease☆27Updated 7 years ago
- UniProt Id Mapping through API☆31Updated 7 months ago
- ☆23Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- A PCR primer tool for DNA assembly flows☆32Updated last year
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆42Updated 2 months ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆41Updated 2 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 3 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated 3 weeks ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆28Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 5 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- ☆21Updated 2 months ago
- R package for functionally scoring phosphorylation sites☆19Updated 5 years ago
- Code for LazyAF pipeline☆20Updated last year