Alternatives and similar repositories for pymodulon

Users that are interested in pymodulon are comparing it to the libraries listed below

• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆30Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆55Updated 3 months ago
• kiharalab / GO2Sum
  GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…
  ☆16Updated last year
• sysbio-curie / Neko
  This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.
  ☆17Updated 4 months ago
• biocore / q2-qemistree
  Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".
  ☆30Updated 2 years ago
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆34Updated 3 years ago
• ylaboratory / gene-embedding-benchmarks
  Benchmarking gene embeddings on single, paired, and gene set tasks
  ☆18Updated 2 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆67Updated last year
• zmahnoor14 / MAW
  Metabolome Annotation Workflow
  ☆26Updated 3 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 3 years ago
• Pharmaco-OmicsLab / EasyPubPlot
  Shiny app to easily create publishable plots for scientific papers
  ☆38Updated 5 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆79Updated 2 months ago
• IEDB / PEPMatch
  ☆23Updated 2 weeks ago
• computational-metabolomics / dimspy
  Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data
  ☆20Updated 2 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• Roestlab / massdash
  MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization
  ☆21Updated 3 weeks ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆43Updated 2 weeks ago
• fermo-metabolomics / FERMO
  Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.
  ☆33Updated this week
• reisalex / SynBioMTS
  An automated model test system for synthetic biology models of gene expression and regulation.
  ☆15Updated 5 years ago
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated last month
• iomega / ms2query
  MS2Query - machine learning assisted library querying of MS/MS spectra
  ☆54Updated 2 months ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆50Updated this week
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆37Updated 4 years ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆24Updated 7 months ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• xia-lab / OptiLCMS
  R package for optimized LC-MS spectra processing
  ☆26Updated last week
• PayneLab / ProteomicsEducation
  ☆40Updated last week
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆29Updated 11 months ago
• lifs-tools / awesome-lipidomics
  A collection of awesome lipidomics tools and resources
  ☆17Updated 3 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year