SBRG / pymodulonLinks
Python package for analyzing and visualizing iModulons
☆13Updated 3 weeks ago
Alternatives and similar repositories for pymodulon
Users that are interested in pymodulon are comparing it to the libraries listed below
Sorting:
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆21Updated last week
- R package for functionally scoring phosphorylation sites☆20Updated 5 years ago
- Shiny app to easily create publishable plots for scientific papers☆34Updated 4 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 6 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 2 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- ☆24Updated 2 years ago
- Python library for calculting synergy of drug combinations using several drug synergy frameworks☆36Updated 8 months ago
- ☆62Updated last year
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆40Updated 4 months ago
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆24Updated 5 months ago
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 3 years ago
- Community-curated tutorials and datasets for ML in proteomics☆54Updated 3 months ago
- Code for LazyAF pipeline☆20Updated last year
- Metabolome Annotation Workflow☆25Updated last year
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆21Updated 6 years ago
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆16Updated last year
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated 2 weeks ago
- Benchmarking gene embeddings on single, paired, and gene set tasks☆12Updated last week
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆20Updated last month
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Absolute quantification package based on quantms.io☆14Updated 2 months ago