TheJacksonLaboratory / weinstock_full_length_16s
Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'
☆10Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for weinstock_full_length_16s
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆25Updated last year
- PanGenomePipeline☆15Updated 7 months ago
- ☆14Updated 3 years ago
- ☆21Updated 5 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- pathway based data integration and visualization☆38Updated 8 months ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆16Updated 4 years ago
- Digenome-toolkit ver2.☆15Updated 3 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- ☆22Updated 9 months ago
- A manually curated database of human gut metabolic modules.☆17Updated 6 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆19Updated last month
- ☆14Updated 2 years ago
- Master of Pores 2☆23Updated last year
- ☆13Updated last month
- A series of small Biopython scripts for downloading sequence data off NCBI's Genbank.☆15Updated 7 years ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Updated 6 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 3 years ago
- supplementary tables and files☆10Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 7 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 2 months ago
- A QIIME 2 implementation of SMURF☆12Updated 2 years ago
- Python bindings for the TaxonKit library☆32Updated 3 months ago
- Metagenome analysis using the Kraken software suite☆29Updated 2 years ago
- ☆11Updated 5 months ago
- alternative splicing analysis pipeline☆17Updated 3 years ago