☆17Feb 5, 2025Updated last year
Alternatives and similar repositories for ARGnet
Users that are interested in ARGnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 29, 2025Updated last year
- ☆19Nov 7, 2025Updated 11 months ago
- This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.☆11Aug 27, 2026Updated last month
- Extract metadata from biosamples in NCBI☆17Mar 12, 2026Updated 7 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Aug 8, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- 生信常用分析☆15Aug 2, 2020Updated 6 years ago
- ☆13Sep 4, 2017Updated 9 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Plasmid exploration of bacterial genomes☆28Sep 27, 2026Updated 2 weeks ago
- Bayesian network toolkit, with applications for phylogenetic analysis☆12Oct 5, 2026Updated last week
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Aug 6, 2026Updated 2 months ago
- ☆22Sep 4, 2024Updated 2 years ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆52Feb 2, 2021Updated 5 years ago
- Host prediction for phages☆29Nov 6, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 11 months ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆66Jun 5, 2025Updated last year
- Trying to train LoRAs for ESM-2☆13Aug 6, 2023Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆103Oct 2, 2026Updated last week
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 11 months ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 9 months ago
- Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans☆10Dec 4, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bioinformatics tool to find integrons in bacterial genomes☆95May 7, 2025Updated last year
- This is the repository for DeepHost, a phage host prediction tool.☆24Dec 12, 2024Updated last year
- strain-level analysis tools☆40Oct 21, 2024Updated last year
- Codes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.…☆37Jun 24, 2021Updated 5 years ago
- ☆16Jun 21, 2023Updated 3 years ago
- PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.☆30Jul 21, 2026Updated 2 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆73Oct 6, 2020Updated 6 years ago
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated last week
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- 整合型的对于生物学注释的信息/GO和KEGG全谱注释和富集☆15Nov 8, 2017Updated 8 years ago
- PlasMAAG is a tool to recover plasmids and organisms from metagenomic samples☆32Sep 1, 2026Updated last month
- Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.☆23Jul 27, 2026Updated 2 months ago
- rhierbaps: R implementation of hierBAPS☆36Feb 23, 2026Updated 7 months ago