This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.
☆21May 22, 2026Updated last month
Alternatives and similar repositories for Neko
Users that are interested in Neko are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web tool for exploring large maps of molecular interactions☆11Updated this week
- Computational framework for dataset integration☆12Jul 21, 2023Updated 2 years ago
- A Python Framework for Modeling and Analysis of Signaling Systems☆30May 25, 2026Updated last month
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- Multiscale simulation of multi-cellular system☆11Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Representation of Module Activity☆10May 31, 2017Updated 9 years ago
- Repository of "Personalization of Logical Models With Multi-Omics Data Allows Clinical Stratification of Patients" paper☆11Dec 2, 2025Updated 7 months ago
- Single cell analysis using Low Resource☆20Apr 3, 2026Updated 3 months ago
- Cours de science des données en 1A à Mines Paris - PSL (2024)☆14Jul 9, 2024Updated 2 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 3 months ago
- "Independent Component Analysis of BIg Omics Data"☆13Nov 3, 2022Updated 3 years ago
- ☆20Dec 19, 2024Updated last year
- ☆13Jul 22, 2025Updated 11 months ago
- Simple distributed data manipulation and processing routines in Julia☆16Mar 22, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆35Updated this week
- rna2seg☆26May 15, 2025Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆13Jun 9, 2026Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 3 years ago
- ☆16Apr 29, 2026Updated 2 months ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 3 months ago
- Python package for analyzing and visualizing iModulons☆15May 25, 2026Updated last month
- a tool for mapping free-text descriptions of entities to ontology terms☆26Jul 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.☆15May 4, 2022Updated 4 years ago
- Course Data Analysis for Life Sciences based on the material by Rafael Irizarry & Mike Love☆20Jun 3, 2020Updated 6 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆52Dec 3, 2024Updated last year
- This is a repository containing a ready-to-use environment for singularity in arm64 (Apple M1).☆18Feb 4, 2022Updated 4 years ago
- ☆35Jun 30, 2026Updated last week
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆34Jun 27, 2026Updated last week
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆163Jun 24, 2026Updated 2 weeks ago
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆24May 29, 2026Updated last month
- Sample models for the PhysiCell grammar / rules paper☆34Jul 21, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assign taxonomy with blast, can be used for qiime☆26Mar 25, 2025Updated last year
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 3 years ago
- A template for a dockerized R development environment for VScode☆21Jan 11, 2026Updated 5 months ago
- Patient-Specific Modeling in Python☆19May 25, 2026Updated last month
- ☆33Nov 17, 2025Updated 7 months ago
- Platform for Interactive analysis and Visualization Of Transcriptomics data☆26Jun 9, 2020Updated 6 years ago
- Interesting Scientific Idea Generation Using Knowledge Graphs and LLMs: Evaluations with 100 Research Group Leaders☆38Feb 3, 2025Updated last year