This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.
☆21Oct 1, 2026Updated 2 weeks ago
Alternatives and similar repositories for Neko
Users that are interested in Neko are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/P…☆19Updated this week
- Computational framework for dataset integration☆12Jul 21, 2023Updated 3 years ago
- KDS software for Kinase Drug Selectivity☆10Jun 22, 2026Updated 3 months ago
- A Python Framework for Modeling and Analysis of Signaling Systems☆30Updated this week
- A collection of 280+ Boolean networks from various sources useful for benchmarking or testing.☆24May 29, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PDB-CAT aims to automatically categorize the mmCIF PDB structures based on the type of interaction between atoms in the protein and the l…☆16Oct 6, 2026Updated last week
- INDRA Context Graph Extension☆16Sep 29, 2026Updated 2 weeks ago
- Metadiffusion implemented in Boltz-2☆25Feb 23, 2026Updated 7 months ago
- Connecting AI to biomedical data☆15Oct 6, 2026Updated last week
- SyncToy, but brought up-to-date with a Fluent design and a nod to the past.☆13May 14, 2024Updated 2 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 7 months ago
- ☆15Jul 7, 2024Updated 2 years ago
- ☆15Mar 13, 2026Updated 7 months ago
- Cours de science des données en 1A à Mines Paris - PSL (2024)☆14Jul 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Personal website of Mickaël CANOUIL.☆40Updated this week
- A repository of the analysis and simulation tools for biomolecular modeling, simulations and drug discovery☆13Mar 7, 2025Updated last year
- "Independent Component Analysis of BIg Omics Data"☆15Nov 3, 2022Updated 3 years ago
- Clinical oncology tumor board decision support system made by the Decider project.☆16Apr 22, 2026Updated 5 months ago
- Single cell analysis using Low Resource☆20Sep 28, 2026Updated 2 weeks ago
- ☆13Jul 29, 2026Updated 2 months ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆36Updated this week
- Simple distributed data manipulation and processing routines in Julia☆16Mar 22, 2022Updated 4 years ago
- FunctionaL Omics Processing platform☆12Jul 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MCP server for Open Targets data☆19Oct 9, 2026Updated last week
- The official implementation of paper "Towards Synergistic Path-based Explanations for Knowledge Graph Completion: Exploration and Evaluat…☆15Feb 28, 2025Updated last year
- ☆11Dec 17, 2019Updated 6 years ago
- DNA Microarray Gene Expression Data Classification Using SVM and MLP with Feature Selection Methods Relief and LASSO☆29Jun 25, 2019Updated 7 years ago
- A web application for exploring, analyzing, and curating pathway databases☆13Aug 12, 2023Updated 3 years ago
- Package that facilitates pulling database entries from KEGG via its REST API☆15Aug 12, 2026Updated 2 months ago
- ☆17Apr 29, 2026Updated 5 months ago
- Notebooks for NYU Statistical Mechanics☆20Jul 6, 2023Updated 3 years ago
- Quarto template for Monash University Department of Econometrics & Business Statistics working paper☆15Jul 29, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Boolean Network Modeling☆41Updated this week
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Mar 26, 2026Updated 6 months ago
- Files to run example simulation study described in Morris, Crowther and White https://arxiv.org/abs/1712.03198☆19Jul 24, 2019Updated 7 years ago
- Python package for biodatafuse project.☆15Apr 22, 2026Updated 5 months ago
- ☆19Oct 22, 2025Updated 11 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- The Expanded Package for IET Solvation☆14Feb 6, 2025Updated last year