List of genome assembly tools
☆98Oct 1, 2026Updated last month
Alternatives and similar repositories for genome_assembly_tools
Users that are interested in genome_assembly_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- PAQman is a tool for a reference-free and comprehensive evaluation of genome assemblies☆10Sep 5, 2026Updated last month
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆42Sep 14, 2026Updated last month
- OpenGL Powered Pretext Contact Map Viewer☆63Oct 22, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆42Oct 23, 2026Updated last week
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Evaluating genome assemblies☆129Oct 21, 2026Updated last week
- Yet another Hi-C scaffolding tool☆185Nov 4, 2024Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆131Jun 18, 2026Updated 4 months ago
- De novo assembly from Oxford Nanopore reads.☆90Jun 29, 2026Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- genomic variant frequency estimation☆12Sep 4, 2026Updated last month
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- k-mer learning materials☆88Feb 14, 2025Updated last year
- Mapping pipeline for data generated using Arima-HiC☆85May 22, 2024Updated 2 years ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Oct 6, 2026Updated 3 weeks ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- FunFlux: A dedicated workflow for fungal genome assembly from short reads, decontamination, completeness validation, and comprehensive ge…☆15Oct 7, 2026Updated 3 weeks ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 11 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- Find, circularise and annotate mitogenome from PacBio assemblies☆204May 11, 2025Updated last year
- Haploidy and Size Completeness Estimation☆15Apr 11, 2024Updated 2 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆179Updated this week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 4 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆56Apr 1, 2026Updated 7 months ago
- haplotypic duplication identification tool☆298Oct 30, 2025Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆35Oct 26, 2026Updated last week
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆189Jul 30, 2026Updated 3 months ago
- VGP repository for the genome assembly working group☆194Mar 31, 2026Updated 7 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Oct 25, 2026Updated last week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆252Sep 6, 2024Updated 2 years ago
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated 11 months ago