nadegeguiglielmoni / genome_assembly_tools
List of genome assembly tools
☆65Updated this week
Alternatives and similar repositories for genome_assembly_tools:
Users that are interested in genome_assembly_tools are comparing it to the libraries listed below
- a tool for inferring species tree from sequencing reads☆149Updated 2 months ago
- Best practices and workflow for genome annotation☆77Updated 3 weeks ago
- Workflow for Building Microsynteny Networks☆53Updated 2 years ago
- ☆26Updated last month
- A list of software for pangenomics☆111Updated last week
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ☆91Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆133Updated last month
- Pairwise whole genome aligner☆151Updated 2 weeks ago
- ☆39Updated 2 weeks ago
- Bioinformatics tool for Locus Visualisation☆102Updated last month
- NLR annotation tool☆26Updated last year
- source code for EVM☆109Updated 5 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆94Updated 2 months ago
- Dfam Transposable Element Tools Docker container.☆92Updated last month
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆83Updated last year
- A post sequencing QC tool for Oxford Nanopore sequencers☆96Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- accurate LiftOver tool for new genome assemblies☆124Updated 8 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated last week
- Research release basecalling models and configurations☆110Updated 10 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆95Updated 2 months ago
- ☆185Updated last week
- Pangenome-based genome inference☆128Updated 2 weeks ago
- Synteny Imager☆61Updated 8 months ago
- Same species annotation lift over pipeline.☆97Updated last year
- Collection of tools for the analysis of CpG data☆81Updated 3 months ago
- Constructing a pangenome gene graph☆187Updated last month