List of genome assembly tools
☆97Aug 1, 2026Updated last week
Alternatives and similar repositories for genome_assembly_tools
Users that are interested in genome_assembly_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 3 months ago
- OpenGL Powered Pretext Contact Map Viewer☆63Jul 17, 2026Updated 3 weeks ago
- Implementation of ToL genome assembly workflows☆33Updated this week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆129Jun 18, 2026Updated last month
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Mapping pipeline for data generated using Arima-HiC☆85May 22, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆42May 18, 2026Updated 2 months ago
- De novo assembly from Oxford Nanopore reads.☆89Jun 29, 2026Updated last month
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 9 months ago
- Linear-time de novo Long Read Assembler☆42Mar 19, 2026Updated 4 months ago
- ☆17Jun 15, 2026Updated last month
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 weeks ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated this week
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 2 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆79May 20, 2024Updated 2 years ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆50Jun 7, 2023Updated 3 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- VGP repository for the genome assembly working group☆194Mar 31, 2026Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- accurate LiftOver tool for new genome assemblies☆150Aug 8, 2024Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- Centromere mapping and annotation pipeline☆28Jun 26, 2026Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 7 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Importing and manipulating Hi-C data in R☆12Apr 29, 2026Updated 3 months ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Apr 29, 2026Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆243Sep 6, 2024Updated last year
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- k-mer based assembly evaluation☆351Jul 6, 2026Updated last month
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆94Dec 3, 2025Updated 8 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year