cpockrandt / PhyloCSFppLinks
PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF files with PhyloCSF and confidence scores.
☆31Updated 3 years ago
Alternatives and similar repositories for PhyloCSFpp
Users that are interested in PhyloCSFpp are comparing it to the libraries listed below
Sorting:
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- ☆28Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated last week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- Fully automated generation of UCSC assembly hubs☆34Updated 10 months ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 4 years ago
- a lexicographically-based GTF/GFF sorter☆36Updated 4 months ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated this week
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Find Unique genomic Regions☆30Updated this week
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated last week
- convert a blast output to a bed file☆12Updated 10 years ago
- ☆28Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- Scoring GT/AG sites for improving spliced alignment☆45Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- toolkit to process gtf files☆17Updated 3 years ago