Alternatives and similar repositories for GCEN

Users that are interested in GCEN are comparing it to the libraries listed below

• RacconC / gtftools
  ☆13Updated 2 years ago
• liusy-jz / MODAS
  MODAS: Multi-Omics Data Association Study toolkit
  ☆21Updated 7 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 months ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆15Updated last week
• Uauy-Lab / WheatHomoeologExpression
  ☆15Updated 5 years ago
• yexinhai / genomics-analysis-pipeline
  Some useful bioinformatics pipelines for genomics analysis
  ☆14Updated 4 years ago
• yulab-ql / mhaESC_genome
  ☆12Updated last week
• malonge / CallSV
  A long-read SV calling pipeline
  ☆12Updated 3 years ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• jkimlab / mySyntenyPortal
  A stand-alone application for constructing websites for visualizing and browsing synteny blocks
  ☆18Updated 4 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 4 years ago
• Kingsford-Group / rnaseqtools
  toolkit to process gtf files
  ☆17Updated 3 years ago
• BGI-Qingdao / SLR-superscaffolder
  A scaffold assembling pipeline for stLFR reads.
  ☆15Updated 4 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 7 years ago
• gagneurlab / splicemap
  ☆20Updated 8 months ago
• xuzhougeng / wgap
  Whole Genome Annotation Pipeline
  ☆17Updated last week
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 3 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• yiliao1022 / LASTZ_SV_pipeline
  ☆15Updated 5 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 5 months ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆34Updated 6 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆24Updated 3 years ago
• jeanlain / HTvertebrates
  scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species
  ☆10Updated 4 years ago
• MorrellLAB / File_Conversions
  Scripts to convert between file formats for various analyses
  ☆16Updated last month
• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆29Updated 7 years ago
• caasivfbioinfo / Bol_pangenome
  ☆15Updated last year
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 7 years ago
• xunchen85 / ERVcaller
  ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…
  ☆13Updated last year