GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
☆22Mar 26, 2022Updated 3 years ago
Alternatives and similar repositories for GCEN
Users that are interested in GCEN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated 3 weeks ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- 生物信息学入门的系列课程，包括Linux, shell, Python 编程，建库测序，基因组学，以及系统进化，常用软件使用等内容。☆23Sep 16, 2021Updated 4 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Feb 21, 2022Updated 4 years ago
- ☆16May 7, 2023Updated 2 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 3 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Random scripts, mostly for dealing with RADseq data and DNA sequence alignments☆18Oct 2, 2025Updated 5 months ago
- lncRNA-screen☆25Apr 19, 2017Updated 8 years ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Dec 19, 2025Updated 3 months ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- simple django app for blast search☆18Feb 3, 2026Updated last month
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Repository☆10Oct 23, 2024Updated last year
- Scripts of population genomics analysis☆36May 8, 2018Updated 7 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 5 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Apr 24, 2017Updated 8 years ago
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses☆24Mar 7, 2025Updated last year
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- this project is content about my bioinformation analysis code .it may have R，Shell，Python.☆20Nov 9, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Toolkit for analyzing genetics data from admixed populations☆30Feb 13, 2025Updated last year
- This repository contains a reciprocal BLAST program for filtering down BLAST results to best bidirectional hits. It also contains a toolk…☆17Jan 16, 2025Updated last year
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- ☆10May 17, 2022Updated 3 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- The cattle Genotype-Tissue Expression atlas v1☆28Mar 14, 2023Updated 3 years ago