LiLabAtVT / CompareTranscriptome
repository of scripts for comparative transcriptome analysis
☆18Updated 5 years ago
Alternatives and similar repositories for CompareTranscriptome:
Users that are interested in CompareTranscriptome are comparing it to the libraries listed below
- Codes for the lettuce resequencing project in 2020☆29Updated 3 years ago
- ☆21Updated 5 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Scripts to convert between file formats for various analyses☆15Updated 3 weeks ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆25Updated 5 years ago
- tutorial on pggb☆32Updated last month
- A pipeline for isoseq☆23Updated 6 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 2 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated 2 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- ☆27Updated 2 months ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 10 months ago
- De novo annotation of young retrotransposons☆47Updated 2 years ago
- ☆21Updated 6 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆16Updated last year
- ☆28Updated 2 years ago
- Structural variant merging tool☆49Updated 6 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated 10 months ago
- ☆15Updated 4 years ago
- The cattle Genotype-Tissue Expression atlas v1☆23Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 10 months ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- A haplotype analysis toolkit for natural variation study.☆29Updated last year
- ☆11Updated 2 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- perSVade: personalized Structural Variation detection☆38Updated last week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year