LiLabAtVT / CompareTranscriptomeLinks
repository of scripts for comparative transcriptome analysis
☆18Updated 6 years ago
Alternatives and similar repositories for CompareTranscriptome
Users that are interested in CompareTranscriptome are comparing it to the libraries listed below
Sorting:
- tutorial on pggb☆35Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Open source tools and papers for structural variant analysis.☆11Updated 6 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- iTAK☆41Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 4 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 months ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- an R/Shiny application for interactive creation of Circos plot☆48Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Updated 8 months ago
- collection of bioinformatic scripts☆31Updated last year
- visual analysis of your VCF files☆34Updated 2 years ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated last week
- Some bioinformic domestic scripts.☆35Updated 2 years ago
- This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of…☆16Updated last year
- ☆14Updated 10 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- TF-DNA-binding assay analysis pipeline☆12Updated 4 years ago
- ☆24Updated 2 years ago
- Structural variant merging tool☆52Updated 10 months ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆34Updated 7 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆19Updated 4 months ago
- Scripts to convert between file formats for various analyses☆16Updated 2 months ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated last month
- ☆28Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year