Alternatives and similar repositories for hic_qc

Users that are interested in hic_qc are comparing it to the libraries listed below

• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆24Updated last month
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆68Updated 4 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆58Updated 2 years ago
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 9 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆26Updated 7 months ago
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• Shians / NanoMethViz
  ☆32Updated last month
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆32Updated 5 months ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 8 months ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆62Updated 8 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆68Updated 3 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 2 years ago
• DamienFr / GC_content_in_sliding_window
  Calculate GC% and GC deviation for circular genomes
  ☆17Updated 5 years ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 4 months ago
• enormandeau / go_enrichment
  Transcripts annotation and GO enrichment Fisher tests
  ☆26Updated 2 years ago
• josephryan / estimate_genome_size.pl
  Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
  ☆57Updated 2 years ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆80Updated last year
• timplab / nanopore-methylation-utilities
  ☆30Updated 4 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆73Updated 4 years ago
• hillerlab / GenomeAlignmentTools
  Tools for improving the sensitivity and specificity of genome alignments
  ☆58Updated last year
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆58Updated 3 months ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆57Updated last week
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 9 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆64Updated last month