phasegenomics / hic_qc

Related projects ⓘ

Alternatives and complementary repositories for hic_qc

• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆46Updated 2 years ago
• johnssproul / RepeatProfiler
  ☆24Updated 2 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆65Updated 6 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆51Updated last year
• mapleforest / HaploMerger2
  ☆43Updated 7 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆33Updated 2 years ago
• bergmanlab / drosophila-transposons
  Drosophila transposable element canonical sequences
  ☆26Updated 2 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated last month
• DamienFr / GC_content_in_sliding_window
  Calculate GC% and GC deviation for circular genomes
  ☆17Updated 4 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆32Updated last year
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 3 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 2 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• tsackton / linked-selection
  ☆24Updated 7 years ago
• HullUni-bioinformatics / TE-search-tools
  Python wrappers for programs that search for transposable elements
  ☆19Updated 8 years ago
• SIWLab / Lab_Info
  info and docs for the Wright Lab
  ☆14Updated 8 years ago
• JiangYuLab / CNVcaller
  ☆41Updated 10 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆39Updated 5 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 4 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆40Updated 10 months ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated last year
• z0on / GO_MWU
  Rank-based Gene Ontology analysis of gene expression data
  ☆39Updated last year
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆19Updated this week
• BGI-shenzhen / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆52Updated last year
• Shians / NanoMethViz
  ☆24Updated last month