Alternatives and similar repositories for Managing_batch_effects

Users that are interested in Managing_batch_effects are comparing it to the libraries listed below

• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆28Updated 2 weeks ago
• jokergoo / KeywordsEnrichment
  ☆32Updated 2 years ago
• gtonkinhill / TCGA_analysis
  ☆26Updated 2 years ago
• NBISweden / workshop-mlbiostatistics
  Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
  ☆16Updated 3 weeks ago
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated 6 months ago
• js2264 / tidyCoverage
  ☆23Updated last month
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆24Updated 2 years ago
• 123xiaochen / VCFshiny
  ☆29Updated last year
• cxli233 / customized_upset_plots
  Make customized upset plots: from raw data to plots
  ☆62Updated 5 months ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• guokai8 / microbial
  Do microbiome analysis with dada2 and phyloseq object
  ☆14Updated last year
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆14Updated last year
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆27Updated 4 months ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆36Updated 2 months ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 3 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆22Updated 5 years ago
• barreiro-r / fastqc-viz
  A modest re-desing update for the classic FastQC report.
  ☆29Updated 5 months ago
• dsurujon / ShinyOmics
  Exploration of Omics data
  ☆24Updated 5 years ago
• cxli233 / ggtraces
  A tidyverse and grammar of graphics powered line traces visualizer
  ☆30Updated 5 months ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 7 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆40Updated last month
• sunshanwen / BP4RNAseq
  An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…
  ☆14Updated 3 years ago
• jtleek / sva-devel
  ☆28Updated last year
• himelmallick / Tweedieverse
  Differential analysis of multi-omics data based on the Tweedie distribution
  ☆28Updated 2 months ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• cxli233 / ggpathway
  A tutorial for pathway visualization using tidyverse, igraph, and ggraph
  ☆61Updated last year
• YuLab-SMU / MMINP
  Microbe-Metabolite INteractions-based metabolic profiles Predictor
  ☆15Updated 2 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago