Augroup / miniQuantLinks
Improving gene isoform quantification with miniQuant
☆29Updated 2 months ago
Alternatives and similar repositories for miniQuant
Users that are interested in miniQuant are comparing it to the libraries listed below
Sorting:
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated this week
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- ☆38Updated 2 years ago
- ☆20Updated 3 years ago
- ☆24Updated 11 months ago
- ☆37Updated 6 years ago
- ☆25Updated 7 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- ☆27Updated 3 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Long-read splice alignment with high accuracy☆64Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 2 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- ☆14Updated 2 years ago
- ☆11Updated 7 months ago
- ☆17Updated 5 years ago
- ☆37Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated 2 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 2 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Updated 9 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month