Augroup / miniQuantLinks
Improving gene isoform quantification with miniQuant
☆26Updated 3 weeks ago
Alternatives and similar repositories for miniQuant
Users that are interested in miniQuant are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- ☆23Updated 8 months ago
- ☆19Updated 2 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- ☆27Updated 3 years ago
- ☆36Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Updated 8 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- ☆34Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- ☆23Updated 4 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- Invertory of TE-gene isoforms☆11Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- Long read to rMATS☆32Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week