Augroup / miniQuantLinks
Improving gene isoform quantification with miniQuant
☆29Updated last month
Alternatives and similar repositories for miniQuant
Users that are interested in miniQuant are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- ☆38Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated 2 months ago
- ☆23Updated 11 months ago
- ☆27Updated 3 years ago
- ☆37Updated 6 years ago
- ☆20Updated 3 years ago
- ☆14Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆33Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Updated 11 months ago
- ☆17Updated 5 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 11 months ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆25Updated 7 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ☆37Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆20Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- Structural variant merging tool☆55Updated last year
- ☆18Updated last year
- processing 10x genomics reads☆26Updated 6 years ago