Alternatives and similar repositories for miniQuant

Users that are interested in miniQuant are comparing it to the libraries listed below

• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 7 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆72Updated last month
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆22Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• mortazavilab / cerberus
  ☆20Updated this week
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 10 months ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• KolmogorovLab / minda
  ☆27Updated 9 months ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated last year
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆26Updated 4 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆53Updated 5 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• ConesaLab / SQANTI
  ☆14Updated 2 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 6 months ago
• srbehera / DRAGEN_Analysis
  ☆38Updated last year
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆49Updated 2 months ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 2 months ago
• mritchielab / restrander
  ☆12Updated last month
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆64Updated last year
• WGLab / LongReadSum
  ☆27Updated 4 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆30Updated 2 weeks ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• fiberseq / FIRE
  A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
  ☆28Updated 2 months ago