Augroup / miniQuantLinks
Improving gene isoform quantification with miniQuant
☆31Updated 3 months ago
Alternatives and similar repositories for miniQuant
Users that are interested in miniQuant are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- ☆24Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- ☆38Updated last year
- ☆37Updated 6 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 3 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Updated last year
- ☆20Updated 3 years ago
- ☆38Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆27Updated 9 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- ☆20Updated this week
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- ☆27Updated 3 years ago
- ☆17Updated 5 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 10 months ago
- ☆14Updated 2 years ago
- ☆12Updated 3 weeks ago
- Scoring GT/AG sites for improving spliced alignment☆49Updated 2 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 3 years ago