Alternatives and similar repositories for eagleimp

Users that are interested in eagleimp are comparing it to the libraries listed below

• AlgoLab / shark
  Mapping-free software for fishing relevant reads in an RNA-Seq sample
  ☆19Updated 4 years ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated last year
• HurlesGroupSanger / DeNovoWEST
  ☆23Updated 2 months ago
• VGP / vgp-tools
  ☆28Updated 7 months ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 3 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• gjun / muCNV
  ☆20Updated 2 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last year
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated this week
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 5 months ago
• GregoryFaust / SVsim
  SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.
  ☆18Updated 7 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• mcfrith / dnarrange
  ☆16Updated 10 months ago
• wdecoster / surpyvor
  A python wrapper around SURVIVOR
  ☆20Updated last year
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆45Updated 2 months ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆28Updated last year
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• AlgoLab / galig
  A graph aligner
  ☆29Updated last year
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 7 months ago
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 3 weeks ago
• J35P312 / FindSV
  Structural variant pipeline
  ☆17Updated 5 years ago