ikmb / eagleimpLinks
☆27Updated last month
Alternatives and similar repositories for eagleimp
Users that are interested in eagleimp are comparing it to the libraries listed below
Sorting:
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- ☆23Updated last month
- ☆20Updated last year
- ☆28Updated 6 months ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 7 years ago
- GBWT-based handle graph☆31Updated last week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Structural variant pipeline☆17Updated 5 years ago
- ☆16Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Sample Contamination Estimate from VCF☆21Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- ☆14Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- Location of public benchmarking; primarily final results☆18Updated 8 months ago
- Easy genomic regions for short-read variant calling☆44Updated last month