code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al
☆19Feb 22, 2022Updated 4 years ago
Alternatives and similar repositories for deconvolution
Users that are interested in deconvolution are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jun 27, 2025Updated last year
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preter…☆11May 13, 2023Updated 3 years ago
- An et al. Nature Communications 2023☆15Jan 19, 2023Updated 3 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- ☆11May 21, 2024Updated 2 years ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆11Aug 28, 2026Updated 3 weeks ago
- ☆59Mar 9, 2022Updated 4 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated 3 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 2 months ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 6 years ago
- ☆19Dec 1, 2021Updated 4 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 4 years ago
- ☆17Jun 29, 2026Updated 2 months ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 6 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆80Sep 12, 2024Updated 2 years ago
- ☆16Jul 9, 2026Updated 2 months ago
- ☆22Jan 16, 2026Updated 8 months ago
- Spring 2017 Chemical and Reaction Engineering☆12May 9, 2017Updated 9 years ago
- Find CNVs in single cell sequencing data.☆22Apr 4, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Utility functions for FACETS☆40Oct 24, 2025Updated 10 months ago
- R package for CRAG☆12Feb 17, 2025Updated last year
- A statistical simulator for rational scRNA-seq experimental design☆14Dec 14, 2020Updated 5 years ago
- ☆12Aug 2, 2020Updated 6 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆24Mar 28, 2022Updated 4 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- BISulfite-seq CUI Toolkit☆28Aug 18, 2026Updated last month
- Biological file format specimens for testing packages, and functions to assist in testing.☆16Nov 18, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Jun 4, 2017Updated 9 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- ☆14Mar 28, 2025Updated last year
- 📊 Graphical User Interface for TCC package☆47Mar 8, 2024Updated 2 years ago
- myVCF: a web-based platform for target and exome mutations data management☆21Apr 13, 2021Updated 5 years ago
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 9 months ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago