sevahn / deconvolution
code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al
☆13Updated 3 years ago
Alternatives and similar repositories for deconvolution:
Users that are interested in deconvolution are comparing it to the libraries listed below
- ☆24Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆37Updated 4 years ago
- Micro DNA identification☆22Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆45Updated 6 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- ☆17Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- ☆14Updated 2 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 9 months ago
- RNA editing tests☆16Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- ☆18Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆28Updated 11 months ago
- ☆33Updated 5 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Network construction Algorithm☆20Updated 5 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 8 months ago