sevahn / deconvolutionLinks
code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al
☆15Updated 3 years ago
Alternatives and similar repositories for deconvolution
Users that are interested in deconvolution are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆17Updated 6 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆28Updated 3 weeks ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Methods and analysis for Garcia-Nieto, et al. Somatic mutations☆16Updated 5 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆19Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 11 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 5 years ago
- RNA editing tests☆17Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- ☆17Updated 2 years ago
- ☆39Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Micro DNA identification☆24Updated 4 years ago
- MutSig2CV from Lawrence et al. 2014☆33Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Updated 2 months ago
- ☆51Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆15Updated 3 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 7 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago