Alternatives and similar repositories for proxysnps

Users that are interested in proxysnps are comparing it to the libraries listed below

• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 7 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated 2 months ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆46Updated last year
• nignatiadis / IHW
  Independent Hypothesis Weighting
  ☆15Updated last year
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆18Updated 9 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆34Updated 7 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 11 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 8 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated 2 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• oncogenetics / LocusExplorer
  An interactive graphical illustration of genetic associations and their biological context
  ☆17Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 4 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 9 years ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆41Updated 4 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆42Updated last year
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 8 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆46Updated 5 months ago