jmonlong / sQTLseekeRLinks
R package to detect splicing QTLs (sQTLs)
☆15Updated 4 years ago
Alternatives and similar repositories for sQTLseekeR
Users that are interested in sQTLseekeR are comparing it to the libraries listed below
Sorting:
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated this week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- DriverPower☆26Updated 8 months ago
- ☆18Updated 6 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 3 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago