jmonlong / sQTLseekeR
R package to detect splicing QTLs (sQTLs)
☆15Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for sQTLseekeR
- GTEx analysis scripts☆20Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Genomic Association Tester☆29Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- An interactive graphical illustration of genetic associations and their biological context☆15Updated 8 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 5 months ago
- ☆24Updated 6 months ago
- Published methods☆15Updated 8 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A tool to plot significant regions of GWAS☆29Updated last year
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆26Updated 2 years ago
- RNA-Seq pipeline☆34Updated 9 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆21Updated last month
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago