jmonlong / sQTLseekeRLinks
R package to detect splicing QTLs (sQTLs)
☆15Updated 4 years ago
Alternatives and similar repositories for sQTLseekeR
Users that are interested in sQTLseekeR are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆23Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- chia pet analysis software☆25Updated 6 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- a set of NGS pipelines☆24Updated last week
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- An interactive graphical illustration of genetic associations and their biological context☆16Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 9 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆16Updated 5 years ago