Alternatives and similar repositories for demeter

Users that are interested in demeter are comparing it to the libraries listed below

• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• simone-rizzetto / VDJPuzzle
  T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data
  ☆10Updated 7 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• rnabioco / cellar
  scRNA-Seq analysis vignettes
  ☆9Updated 3 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆26Updated 2 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆25Updated last year
• cancerdatasci / ceres
  Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens
  ☆29Updated 6 years ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated 2 weeks ago
• lkuchenb / imseq
  IMSEQ - IMmunogenetic SEQuence Analysis
  ☆15Updated 6 years ago
• immcore / iS-CellR
  iS-CellR: interactive graphical tool for analysis of single-cell RNAseq data
  ☆24Updated 5 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 9 months ago
• edwardslee / alphabetr
  R package for obtaining TCR alpha-beta sequence pairs
  ☆8Updated 8 years ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆14Updated last week
• datarail / gr_metrics
  ☆15Updated 2 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆37Updated last year
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• flo-compbio / gopca
  GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
  ☆14Updated 7 years ago
• ELELAB / MoonlightR
  ☆17Updated last year
• mozack / vdjer
  V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
  ☆29Updated 2 years ago
• kmayerb / tcrdist2
  Quantifiable predictive features define epitope-specific T cell receptor repertoires
  ☆13Updated 2 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• hfang-bristol / XGR
  An R package to increase interpretability of genes and SNPs (eg identified from GWAS and eQTL mapping)
  ☆10Updated 2 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 10 months ago
• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆18Updated 6 years ago
• FredHutch / reproducible-workflows
  Reproducible Workflows, curated at the Fred Hutch
  ☆12Updated 6 years ago