dwaithe / amcaLinks
This is a repository for the Automated Microscopy Control Environment.
☆10Updated 4 years ago
Alternatives and similar repositories for amca
Users that are interested in amca are comparing it to the libraries listed below
Sorting:
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Updated 4 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- Easily read and write ome-tiff images in python☆28Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Python image segmentation plugin☆31Updated 5 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 4 years ago
- ☆24Updated 5 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- Running ImJoy plugins in Jupyter notebooks☆11Updated 3 years ago
- ☆23Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆24Updated 10 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Updated last week
- ImageJ convenience layer for N5☆19Updated 2 months ago
- ☆24Updated 4 months ago
- ☆20Updated this week
- Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.☆35Updated 9 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Updated 3 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago
- Process images using SimpleITK in napari☆23Updated 8 months ago
- Advanced Tool for Labeling And Segmentation☆39Updated last year
- A library to facilitate machine learning on multi-dimensional images.☆87Updated 2 weeks ago
- Read Olympus image files (OIF and OIB).☆13Updated last week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆25Updated 10 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- python tools for BigDataViewer☆22Updated last year
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆46Updated 2 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Updated 5 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago