ome / ome-model
OME model (specification, code generator, implementation)
☆14Updated this week
Alternatives and similar repositories for ome-model:
Users that are interested in ome-model are comparing it to the libraries listed below
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 3 months ago
- ☆14Updated this week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆25Updated this week
- Python project containing Ice remoting code for OMERO☆23Updated 2 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆20Updated last month
- Image Cytometry Standard file reading and writing.☆17Updated 5 months ago
- native Python dataclasses for the OME data model☆55Updated last week
- Model repository for bioimage.io☆16Updated last year
- Easily read and write ome-tiff images in python☆26Updated 10 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆22Updated this week
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Updated 8 months ago
- Import Trackmate XML files in Python as Pandas dataframe☆9Updated last week
- ☆35Updated last week
- GPU-accelerated image processing for everyone☆51Updated 8 months ago
- ☆22Updated 3 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- A fully scalable robust image feature extraction library.☆20Updated last month
- Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)☆12Updated 5 years ago
- GIve easy, high-level access to ome-zarr fileset☆13Updated last month
- python tools for BigDataViewer☆21Updated 2 months ago
- Python bindings for MMCore, Micro-Manager's device control layer☆34Updated last week
- ☆18Updated 10 months ago
- ☆16Updated last week
- A 3D interactivity toolbox for napari☆33Updated 3 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- Pydantic models for OME-NGFF☆23Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 6 months ago
- ImageJ convenience layer for N5☆16Updated 3 weeks ago
- ImageJ+ImageJ2 compatibility layer☆17Updated 2 weeks ago