OME model (specification, code generator, implementation)
☆16Jan 22, 2026Updated 2 months ago
Alternatives and similar repositories for ome-model
Users that are interested in ome-model are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Mar 16, 2026Updated 3 weeks ago
- A plugin for exporting RDF from OMERO☆15Feb 27, 2026Updated last month
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 6 months ago
- native Python dataclasses for the OME data model☆65Apr 2, 2026Updated last week
- Create web-based OME-Zarr galleries☆23Nov 6, 2025Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python project containing Ice remoting code for OMERO☆28Mar 25, 2026Updated 2 weeks ago
- Galaxy Workflow Format 2☆13Updated this week
- Sphinx-based documentation for the Open Microscopy Environment☆24Apr 1, 2026Updated last week
- Easily read and write ome-tiff images in python☆28May 6, 2024Updated last year
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 3 months ago
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated 2 months ago
- Streaming directly to Zarr on the file system or S3☆29Apr 2, 2026Updated last week
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Nov 3, 2025Updated 5 months ago
- Raw format to OME-TIFF converter☆56Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Mar 3, 2026Updated last month
- N-dimensional, multiresolution file format for Micro-Manager☆14Mar 13, 2026Updated 3 weeks ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Updated this week
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆216Feb 16, 2026Updated last month
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 8 months ago
- The Fluorescent Protein Database☆79Apr 1, 2026Updated last week
- Galaxy Docker repository with Imaging tools (Galaxy Imaging flavour)☆12Jan 11, 2026Updated 3 months ago
- A curated list of awesome RDM resources for researchers and organisations☆30Mar 2, 2026Updated last month
- Generate Dose-Response Curves in Python☆13Mar 4, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- A template repo used to make new napari plugins☆36Apr 2, 2026Updated last week
- Fiji plugins for starting BigDataViewer and exporting data.☆22Sep 19, 2025Updated 6 months ago
- Image stitching☆12Dec 23, 2018Updated 7 years ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆80Dec 16, 2024Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆119Apr 1, 2026Updated last week
- rapidSTORM open-source localization microscopy software☆19Jul 6, 2018Updated 7 years ago
- A Python package for generating and working with codemeta☆29Mar 18, 2026Updated 3 weeks ago
- ☆20May 10, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Issues and milestones for the DataCite organization☆48Aug 30, 2024Updated last year
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆25Updated this week
- Methods for Image-Based Cell Profiling☆52May 8, 2024Updated last year
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated 3 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated last year
- A CLI tool for synchronizing software project metadata☆14Mar 14, 2025Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago