ome / ome-modelLinks
OME model (specification, code generator, implementation)
☆16Updated 4 months ago
Alternatives and similar repositories for ome-model
Users that are interested in ome-model are comparing it to the libraries listed below
Sorting:
- Python project containing Ice remoting code for OMERO☆27Updated last month
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 4 years ago
- A plugin for exporting RDF from OMERO☆15Updated 2 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆17Updated 3 months ago
- ☆39Updated this week
- Galaxy tools for image analysis☆18Updated this week
- ☆18Updated 3 weeks ago
- BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆24Updated last week
- An OMERO.web app for creating Figures from images in OMERO☆17Updated 2 weeks ago
- native Python dataclasses for the OME data model☆62Updated this week
- Streaming directly to Zarr on the file system or S3☆23Updated this week
- Jupyter Notebooks for the Image Data Resource☆18Updated last week
- libCZI is an Open Source Cross-Platform C++ library to read and write CZI.☆58Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆40Updated 3 weeks ago
- Create web-based OME-Zarr galleries☆21Updated last month
- Easily read and write ome-tiff images in python☆28Updated last year
- ☆14Updated this week
- OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …☆214Updated last week
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated 3 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆18Updated this week
- Pydantic models for OME-NGFF☆24Updated last month
- ☆23Updated last month
- A minimal Python package for reading and validating OME-Zarr (meta)data☆35Updated last week
- ITK IO for images stored in OME-Zarr format.☆11Updated 2 months ago
- Image Cytometry Standard file reading and writing.☆18Updated 3 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Fusing image tiles with dask array's map_blocks☆30Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- ImageJ convenience layer for N5☆17Updated 2 months ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆141Updated this week