Histology Topography Cytometry Analysis Toolbox
☆69Mar 23, 2026Updated 6 months ago
Alternatives and similar repositories for histoCAT
Users that are interested in histoCAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools to handle IMC data☆25Mar 31, 2022Updated 4 years ago
- CellProfiler plugins for multiplexed image analysis☆13Feb 16, 2021Updated 5 years ago
- ☆24Mar 22, 2023Updated 3 years ago
- Helper functions for working with inForm data.☆25May 3, 2022Updated 4 years ago
- ☆14Jan 16, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A pixel classification based multiplexed image segmentation pipeline☆108Dec 5, 2023Updated 2 years ago
- A toolkit for processing multiplexed tissue images☆68Updated this week
- Microscopy Image Cytometry Toolkit☆118Jul 15, 2022Updated 4 years ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Sep 2, 2026Updated last month
- ☆30Oct 4, 2024Updated 2 years ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated last month
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆71Sep 19, 2025Updated last year
- Aligning images acquired with the IBEX microscopy imaging technique☆20Jun 28, 2026Updated 3 months ago
- ☆15Oct 24, 2025Updated 11 months ago
- Integrated pipeline for multiplexed image analysis☆108Sep 18, 2026Updated 3 weeks ago
- Algorithmic and Utility Extensions for the Imaris Program☆21Aug 28, 2026Updated last month
- Python client for IONpath MIBItracker API, plus utility functions for working with MIBItiff images.☆14Oct 15, 2024Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆77Nov 4, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Sep 23, 2025Updated last year
- Image stitching☆13Dec 23, 2018Updated 7 years ago
- Trained models for use with QuPath☆16Jun 25, 2026Updated 3 months ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Apr 21, 2025Updated last year
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Web Image Processing Pipeline (WIPP)☆27Dec 19, 2025Updated 9 months ago
- Stack denoising autoencoder (SdA) code in "Deep learning based functional site-level and UTR-level human miRNA target prediction"☆11May 7, 2019Updated 7 years ago
- Python scripts library for Aivia. Ask your questions on the forum >>☆15Sep 30, 2026Updated 2 weeks ago
- ☆23Mar 26, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Scripts for interacting with and generating data from the commercial MIBIScope☆17Aug 11, 2026Updated 2 months ago
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆29Dec 3, 2025Updated 10 months ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- QuPath extension to interactively align images☆29Aug 7, 2025Updated last year
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 6 years ago