SchapiroLabor / histoCATLinks
Histology Topography Cytometry Analysis Toolbox
ā67Updated last year
Alternatives and similar repositories for histoCAT
Users that are interested in histoCAT are comparing it to the libraries listed below
Sorting:
- Spatial Single-Cell Analysis Toolkitā92Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics š„š¬āØā53Updated last year
- Image Mass Cytometry analysis pipelineā25Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information ā¦ā35Updated last year
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentationā47Updated 3 years ago
- R package for visualization of highly multiplexed imaging dataā32Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.ā37Updated last year
- ā29Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"ā10Updated 2 years ago
- A pixel classification based multiplexed image segmentation pipelineā95Updated last year
- ā36Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide imagesā18Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mappingā80Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cā¦ā14Updated 3 years ago
- ā27Updated 8 months ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive fā¦ā62Updated 7 months ago
- Python package for reading imaging mass cytometry (IMC) filesā15Updated last week
- ā34Updated 5 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.ā27Updated 9 months ago
- Integrated pipeline for multiplexed image analysisā90Updated 2 months ago
- ā43Updated last week
- Interactive visualization of spatial omics dataā59Updated last week
- Multiple-choice microscopy pipelineā132Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.ā126Updated 3 weeks ago
- ā14Updated 3 years ago
- R based workflow for multiplexed imaging dataā32Updated this week
- ā62Updated this week
- A toolkit for processing multiplexed tissue imagesā62Updated 2 weeks ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics dataā43Updated 11 months ago
- comsegā21Updated 4 months ago