A structural variant filtering and prioritization tool for long-read sequencing data
☆45May 26, 2026Updated last month
Alternatives and similar repositories for needLR
Users that are interested in needLR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆39Mar 25, 2026Updated 3 months ago
- Nanopore sequencing-based episignature detection☆18Jun 10, 2026Updated last month
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- VNTR annotation using motif selection☆42May 25, 2026Updated last month
- Tools for fiberseq data written in rust.☆69Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A variant caller for the GBA gene using WGS data☆23Jul 31, 2024Updated last year
- ATaRVa - Analysis of Tandem Repeat Variation☆24Updated this week
- ☆27Nov 14, 2025Updated 8 months ago
- Workflow to annotate SNVs, indels, and structural variants☆17May 13, 2025Updated last year
- WDL workflows for variant calling and assembly using ONT☆40Jun 30, 2026Updated 3 weeks ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18May 4, 2026Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Short Tandem Repeat disease loci resource☆29Updated this week
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆29Jun 16, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 7 months ago
- Jasmine: SV Merging Across Samples☆256Dec 20, 2024Updated last year
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆22Jan 4, 2026Updated 6 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Jun 19, 2026Updated last month
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated 3 weeks ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Sep 27, 2023Updated 2 years ago
- Variant Interpretation Pipeline☆51Jul 1, 2026Updated 3 weeks ago
- ☆24Mar 20, 2024Updated 2 years ago
- ☆44Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆176Updated this week
- Kmer Analysis of Pileups for Genotyping☆40Updated this week
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Mar 26, 2026Updated 3 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jun 25, 2026Updated 3 weeks ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- ☆52Jun 25, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆187Jul 1, 2026Updated 2 weeks ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Structural Variants ANnotator (SVAN)☆18Jun 27, 2026Updated 3 weeks ago
- Structural variant toolkit for VCFs☆420May 22, 2026Updated last month
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Jul 12, 2026Updated last week